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MK448900.1__QBX26087.1__Javan290_0033__00032
Bact-VirMK448900.1__QBX26087.1__Javan290_0033__00032
Identity
- Accession:
- MK448900 ↗
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-170
Domain cluster:
rep: NC_031040.1__YP_009283227.1__BI030_gp31__00031__D4-146
D2
high
residues 237-307
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5djsA03 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.66 | 54.0 | 4.09e-01 | 90.1% | 85.7% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 46.0 | 4.12e-01 | 73.2% | 63.5% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 46.0 | 4.21e-01 | 85.9% | 88.1% |
| 4i1mB01 | 1.20.120.1700 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 47.0 | 3.92e-01 | 87.3% | 72.9% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.58 | 34.0 | 3.51e-01 | 71.8% | 61.2% |
| 4g1tA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 41.0 | 3.45e-01 | 76.1% | 95.9% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 35.0 | 3.12e-01 | 98.6% | 43.4% |
| 6vbkB02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 40.0 | 3.97e-01 | 78.9% | 100.0% |
| 7w5gA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 44.0 | 2.94e-01 | 95.8% | 76.4% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 40.0 | 3.04e-01 | 83.1% | 59.4% |
| 1hciA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 41.0 | 3.42e-01 | 87.3% | 85.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979047 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 43.0 | 3.32e-01 | 78.9% | 58.2% |
| 4003222 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.57 | 33.0 | 2.93e-01 | 88.7% | 39.0% |
| 3516132 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.57 | 45.0 | 3.52e-01 | 87.3% | 90.6% |
| 2323907 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.55 | 37.0 | 2.66e-01 | 95.8% | 22.0% |
| 3487862 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.55 | 39.0 | 2.69e-01 | 74.6% | 26.2% |
| 3346191 | 611.7.1.13 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › PUB10_N | 0.53 | 39.0 | 3.46e-01 | 80.3% | 79.1% |
| 5042408 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.52 | 43.0 | 3.87e-01 | 100.0% | 98.2% |
| 3628290 | 150.1.1.24 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Prominin | 0.50 | 41.0 | 2.82e-01 | 93.0% | 52.7% |
D3
high
residues 316-401
Domain cluster:
rep: MT880870.1__QPB07618.1__PLKLOBMN_00047__00047__D43-113
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF15542.12 best | Ntox50 | 74.9 | 1.00e-20 | 100.0% | 97.8% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 34.0 | 3.74e-01 | 96.5% | 79.1% |
| 2fd8A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.54 | 44.0 | 3.50e-01 | 94.2% | 94.5% |
| 2krsA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 33.0 | 3.74e-01 | 96.5% | 86.7% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 26.0 | 3.04e-01 | 89.5% | 64.3% |
| 3kxeA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.53 | 44.0 | 4.36e-01 | 100.0% | 86.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032503 | 372.1.1.3 ↗ | a+b complex topology › RNase A-like › RNase A-like › RNase A-like › Ntox50 | 0.84 | 73.0 | 7.03e-01 | 91.9% | 96.8% |
| 3933788 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 30.0 | 3.43e-01 | 93.0% | 71.7% |
| None | — | 0.51 | 36.0 | 2.50e-01 | 76.7% | 82.2% | |
| 3519861 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 27.0 | 3.11e-01 | 94.2% | 70.0% |
D4
medium
residues 171-224
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oq2A00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 55.0 | 4.65e-01 | 94.4% | 77.8% |
| 5aooC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 54.0 | 3.61e-01 | 98.1% | 52.3% |
| 1tme300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 53.0 | 3.54e-01 | 98.1% | 49.1% |
| 2qngA01 | 2.60.60.30 | Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains | 0.62 | 50.0 | 3.66e-01 | 94.4% | 69.1% |
| 7altB01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 48.0 | 3.54e-01 | 92.6% | 99.4% |
| 2h6oA03 | 2.60.40.2820 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 48.0 | 3.93e-01 | 94.4% | 63.6% |
| 1fmd200 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 48.0 | 3.33e-01 | 98.1% | 49.5% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.58 | 47.0 | 4.14e-01 | 92.6% | 95.2% |
| 2fgcA03 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.57 | 48.0 | 4.37e-01 | 98.1% | 96.1% |
| 2petA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 46.0 | 3.72e-01 | 96.3% | 64.3% |
| 4dmiA02 | 2.60.120.1010 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 45.0 | 3.56e-01 | 100.0% | 67.2% |
| 2hdeA01 | 3.10.20.550 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ASAP complex, SAP18 subunit | 0.55 | 46.0 | 3.63e-01 | 98.1% | 54.5% |
| 3cu7A06 | 2.20.130.20 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › | 0.55 | 45.0 | 3.70e-01 | 98.1% | 58.6% |
| 3w42A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 45.0 | 3.08e-01 | 94.4% | 35.2% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.55 | 45.0 | 2.62e-01 | 94.4% | 12.4% |
| 4mz2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.60e-01 | 98.1% | 64.9% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.54 | 46.0 | 3.60e-01 | 98.1% | 50.0% |
| 3uyjA00 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.53 | 42.0 | 2.83e-01 | 92.6% | 76.1% |
| 2cdoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 3.24e-01 | 92.6% | 60.1% |
| 5yl1A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.19e-01 | 100.0% | 49.7% |
| 3cjiB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 3.00e-01 | 98.1% | 33.6% |
| 1uenA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.45e-01 | 100.0% | 45.6% |
| 2eefA01 | 2.60.40.2440 | Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain | 0.52 | 43.0 | 3.35e-01 | 96.3% | 51.2% |
| 3vvvA00 | 2.60.40.2840 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.22e-01 | 85.2% | 75.0% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.71e-01 | 94.4% | 97.3% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3541113 | 10.2.1.18 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen | 0.67 | 58.0 | 4.22e-01 | 100.0% | 73.5% |
| 3501495 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 54.0 | 4.07e-01 | 96.3% | 55.6% |
| 3270626 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.63 | 51.0 | 3.97e-01 | 92.6% | 72.8% |
| 3876968 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 54.0 | 3.76e-01 | 100.0% | 65.3% |
| None | — | 0.63 | 52.0 | 2.96e-01 | 96.3% | 10.4% | |
| 3753929 | 11.1.1.290 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ASTN1_2_fn3 | 0.62 | 54.0 | 3.91e-01 | 100.0% | 50.3% |
| 3633743 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.62 | 51.0 | 3.19e-01 | 96.3% | 20.9% |
| 3925162 | 10.32.1.72 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD | 0.62 | 53.0 | 4.24e-01 | 98.1% | 51.8% |
| 3263434 | 3333.1.1.0 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 | 0.62 | 52.0 | 3.65e-01 | 100.0% | 60.5% |
| 3641987 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.60 | 51.0 | 3.67e-01 | 96.3% | 49.4% |
| 3615884 | 11.1.1.1189 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › XRCC1_N | 0.60 | 53.0 | 4.94e-01 | 100.0% | 82.6% |
| 1312402 | 10.9.1.3 ↗ | beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Tyrosinase_C | 0.60 | 48.0 | 3.73e-01 | 98.1% | 84.2% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 49.0 | 4.78e-01 | 96.3% | 98.3% |
| 4526685 | 10.32.1.208 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cleaved_Adhesin | 0.57 | 47.0 | 3.42e-01 | 100.0% | 56.7% |
| 4115421 | 11.15.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C | 0.57 | 46.0 | 3.80e-01 | 98.1% | 53.9% |
| 3451645 | 10.32.1.210 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_PATL1_C | 0.57 | 47.0 | 4.32e-01 | 98.1% | 78.7% |
| 3447537 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.57 | 45.0 | 3.11e-01 | 90.7% | 44.4% |
| 3247063 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 49.0 | 3.95e-01 | 100.0% | 59.0% |
| 3578087 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 49.0 | 4.41e-01 | 100.0% | 74.7% |
| 3230186 | 10.4.1.19 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein | 0.56 | 38.0 | 3.04e-01 | 72.2% | 81.7% |
| 3580980 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 3.97e-01 | 100.0% | 57.9% |
| 3508351 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.55 | 46.0 | 3.45e-01 | 98.1% | 44.7% |
| 3219469 | 4004.1.1.0 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like | 0.54 | 44.0 | 3.09e-01 | 100.0% | 99.1% |
| 4970003 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.54e-01 | 100.0% | 60.0% |
| 4926801 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 3.48e-01 | 96.3% | 45.9% |
| 3925350 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 47.0 | 3.66e-01 | 96.3% | 48.7% |
| 3875909 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.53 | 42.0 | 3.21e-01 | 100.0% | 60.6% |
| 3697897 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 44.0 | 3.46e-01 | 100.0% | 43.1% |
| 3660912 | 76.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin | 0.53 | 44.0 | 3.42e-01 | 98.1% | 40.0% |
| 4000607 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 45.0 | 3.53e-01 | 98.1% | 48.3% |
| 4003418 | 10.32.1.226 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Tenm3 | 0.53 | 41.0 | 3.32e-01 | 94.4% | 75.2% |
| 4940384 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 3.53e-01 | 100.0% | 59.1% |
| 3753092 | 11.2.1.76 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28335 | 0.51 | 39.0 | 3.03e-01 | 96.3% | 99.4% |
| 3432380 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.51 | 41.0 | 3.12e-01 | 94.4% | 59.3% |
| 3869382 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.31e-01 | 96.3% | 44.6% |
| 3479733 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 41.0 | 3.52e-01 | 96.3% | 55.8% |