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MK448900.1__QBX26113.1__Javan290_0059__00006

Bact-Vir

MK448900.1__QBX26113.1__Javan290_0059__00006

Identity

Accession:
MK448900 ↗
Kingdom:
phage

Quality

95.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 59.0 5.82e-01 100.0% 75.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 59.0 5.57e-01 100.0% 68.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.76 60.0 5.88e-01 100.0% 80.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.26e-01 100.0% 73.8%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.67 61.0 5.84e-01 100.0% 93.8%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.67 49.0 4.54e-01 100.0% 62.0%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 58.0 5.28e-01 100.0% 80.3%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.65 48.0 4.31e-01 100.0% 57.1%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 58.0 5.27e-01 100.0% 77.6%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 57.0 5.17e-01 100.0% 81.6%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 56.0 5.13e-01 100.0% 86.5%
3pp2A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 54.0 4.38e-01 98.2% 70.5%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 42.0 3.37e-01 71.4% 47.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.38e-01 100.0% 71.9%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.82e-01 100.0% 86.1%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 41.0 3.11e-01 73.2% 41.5%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.89e-01 100.0% 90.6%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.95e-01 100.0% 91.7%
1zmaA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 39.0 3.19e-01 71.4% 74.6%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 50.0 4.78e-01 100.0% 82.4%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 49.0 3.39e-01 100.0% 28.5%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.12e-01 100.0% 56.1%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 49.0 4.20e-01 100.0% 86.2%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 48.0 4.70e-01 100.0% 95.2%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 42.0 2.73e-01 85.7% 29.5%
3orjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.22e-01 75.0% 87.9%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 47.0 2.94e-01 100.0% 17.5%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.38e-01 98.2% 93.0%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.59e-01 100.0% 91.9%
3vb0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 40.0 3.19e-01 80.4% 92.2%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.63e-01 98.2% 59.7%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.61e-01 100.0% 96.5%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 46.0 4.45e-01 100.0% 87.7%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.21e-01 100.0% 84.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.05e-01 100.0% 65.5%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.52e-01 100.0% 96.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 3.66e-01 100.0% 57.3%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 44.0 2.76e-01 100.0% 16.5%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 40.0 3.45e-01 83.9% 76.3%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.52 39.0 3.34e-01 83.9% 73.0%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 3.85e-01 94.6% 62.7%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 4.34e-01 100.0% 98.2%
2jaeA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.09e-01 98.2% 35.1%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 44.0 2.96e-01 100.0% 93.3%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.52 36.0 3.16e-01 75.0% 82.6%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.51 43.0 3.62e-01 98.2% 77.8%
3oc4B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.97e-01 94.6% 49.5%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 40.0 2.84e-01 89.3% 95.1%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010681 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.82 66.0 5.50e-01 100.0% 51.6%
1263519 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.80 60.0 5.87e-01 100.0% 72.6%
4478186 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 58.0 6.33e-01 100.0% 97.8%
1482194 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.79 59.0 5.82e-01 100.0% 75.0%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.78 58.0 5.18e-01 100.0% 56.2%
5036621 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 57.0 5.78e-01 100.0% 80.0%
4499953 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 57.0 5.63e-01 100.0% 73.3%
4342110 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 62.0 5.62e-01 100.0% 65.8%
4104821 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 62.0 5.62e-01 100.0% 65.3%
4940673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 61.0 5.97e-01 100.0% 80.0%
4261362 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 60.0 5.58e-01 100.0% 68.6%
4973749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 57.0 5.34e-01 100.0% 65.7%
4226934 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 60.0 5.77e-01 100.0% 75.4%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 60.0 5.73e-01 100.0% 75.4%
5045214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.74e-01 100.0% 72.9%
4034317 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.98e-01 100.0% 84.1%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 58.0 5.48e-01 100.0% 71.0%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 58.0 5.43e-01 100.0% 70.0%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.73 61.0 5.20e-01 100.0% 57.8%
4170351 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 52.0 4.76e-01 100.0% 57.3%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 61.0 3.78e-01 100.0% 16.3%
4182977 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.72 50.0 4.97e-01 100.0% 68.3%
4583465 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 52.0 5.41e-01 100.0% 86.0%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 57.0 5.46e-01 100.0% 75.4%
5032461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.95e-01 100.0% 84.6%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.71 54.0 5.33e-01 100.0% 78.3%
5040422 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 62.0 5.61e-01 100.0% 82.7%
4984041 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 62.0 5.58e-01 100.0% 82.7%
5049033 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 62.0 5.57e-01 100.0% 81.3%
3991244 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.69 49.0 5.25e-01 98.2% 95.6%
5027286 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 61.0 5.28e-01 100.0% 71.8%
4947702 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 61.0 5.48e-01 100.0% 82.7%
2575643 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.67 51.0 4.78e-01 100.0% 66.7%
4952214 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 59.0 5.40e-01 100.0% 81.3%
3927363 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.13e-01 100.0% 90.0%
3249327 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 47.0 3.94e-01 78.6% 84.7%
3929784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 5.18e-01 98.2% 98.0%
4959077 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.21e-01 100.0% 95.3%
4995694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.71e-01 100.0% 89.1%
3709279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 54.0 4.59e-01 100.0% 70.0%
3595833 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 53.0 4.47e-01 100.0% 64.2%
4267139 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 4.00e-01 71.4% 98.2%
3997006 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.58 45.0 3.12e-01 92.9% 51.8%
None 0.58 51.0 3.66e-01 100.0% 91.2%
3189501 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.48e-01 100.0% 83.7%
3366452 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 2.82e-01 94.6% 23.6%
3524378 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 49.0 4.87e-01 100.0% 95.0%
3414238 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.58 40.0 4.01e-01 73.2% 72.4%
3914346 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 49.0 4.28e-01 100.0% 62.2%
3928985 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 49.0 4.25e-01 100.0% 63.3%
3487686 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.28e-01 100.0% 64.7%
4119802 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 48.0 4.65e-01 100.0% 84.6%
3599257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.61e-01 100.0% 87.7%
3933965 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 47.0 4.75e-01 100.0% 94.8%
3506704 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 48.0 3.88e-01 100.0% 59.1%
3588755 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 50.0 4.56e-01 100.0% 79.7%
3217113 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 46.0 4.44e-01 96.4% 81.5%
3784710 5.1.5.213 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF29037 0.56 46.0 2.71e-01 92.9% 16.7%
3493244 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.56 41.0 2.62e-01 82.1% 31.2%
3914833 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 47.0 4.45e-01 100.0% 81.4%
3748846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 47.0 4.52e-01 100.0% 84.6%
3773481 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 46.0 4.25e-01 100.0% 78.8%
3539094 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.30e-01 100.0% 81.2%
3503782 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 47.0 4.63e-01 100.0% 91.7%
3398702 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 46.0 4.56e-01 98.2% 90.0%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.65e-01 100.0% 95.0%
436188 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 47.0 4.47e-01 98.2% 92.5%
3573775 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 45.0 4.42e-01 100.0% 84.6%
3519033 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 43.0 3.77e-01 85.7% 68.2%
4610859 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 46.0 4.44e-01 100.0% 84.6%
3585447 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 46.0 4.20e-01 100.0% 70.0%
5076084 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.55 43.0 3.19e-01 87.5% 65.1%
3801719 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 46.0 4.33e-01 100.0% 82.9%
3517456 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.54 46.0 4.25e-01 100.0% 94.7%
3853196 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 43.0 3.42e-01 98.2% 51.4%
3272057 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.33e-01 75.0% 94.1%
3904253 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 45.0 4.34e-01 100.0% 87.7%
4590767 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 45.0 2.71e-01 100.0% 15.4%
3265976 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 3.13e-01 80.4% 80.0%