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MK448902.1__QBX26202.1__Javan308_0033__00033

Bact-Vir

MK448902.1__QBX26202.1__Javan308_0033__00033

Identity

Accession:
MK448902 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-76
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.86 75.0 5.89e-01 100.0% 47.9%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 67.0 7.02e-01 97.2% 98.4%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 65.0 6.96e-01 91.7% 100.0%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 63.0 6.78e-01 86.1% 100.0%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 70.0 6.82e-01 100.0% 90.0%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 59.0 6.41e-01 87.5% 96.7%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 56.0 5.20e-01 90.3% 66.0%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 3.59e-01 70.8% 42.6%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.43e-01 79.2% 71.6%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.64 43.0 3.66e-01 88.9% 43.0%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.64 41.0 4.90e-01 86.1% 100.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.06e-01 83.3% 75.0%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.37e-01 100.0% 82.1%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 44.0 3.86e-01 97.2% 50.5%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.61 39.0 3.88e-01 87.5% 61.0%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 46.0 3.97e-01 100.0% 53.2%
4lwsB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 41.0 3.82e-01 91.7% 58.0%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.58 42.0 4.21e-01 94.4% 76.0%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 44.0 4.61e-01 84.7% 100.0%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 49.0 4.02e-01 98.6% 71.4%
2g5cB02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.57 39.0 3.50e-01 73.6% 73.6%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 43.0 4.54e-01 84.7% 100.0%
1t9hA03 1.10.40.50 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 0.55 40.0 4.16e-01 77.8% 95.6%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.55 44.0 3.69e-01 87.5% 82.5%
4i0xH00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 41.0 4.03e-01 93.1% 75.0%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 41.0 4.22e-01 87.5% 85.1%
2a73B01 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.54 41.0 4.18e-01 83.3% 88.6%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.54 40.0 3.78e-01 97.2% 65.9%
6elqA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 45.0 3.46e-01 97.2% 73.3%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 34.0 3.47e-01 90.3% 67.6%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 42.0 4.30e-01 90.3% 98.5%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.52 41.0 3.36e-01 88.9% 46.2%
3dkxA02 1.10.10.1480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Plasmid replication protein 0.52 36.0 3.67e-01 72.2% 77.9%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 40.0 4.08e-01 93.1% 83.3%
4lqkA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.52 35.0 2.93e-01 72.2% 60.6%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.51 40.0 4.02e-01 97.2% 82.4%
8hk0A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 36.0 3.11e-01 72.2% 53.8%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 41.0 3.31e-01 87.5% 71.9%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 42.0 4.12e-01 93.1% 84.4%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589001 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.91 84.0 7.21e-01 100.0% 65.7%
4146353 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.89 76.0 7.36e-01 100.0% 82.5%
4336182 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.89 76.0 7.00e-01 100.0% 73.3%
4148139 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.87 80.0 6.06e-01 98.6% 45.8%
4518447 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.86 80.0 6.83e-01 100.0% 67.3%
4238054 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.86 73.0 4.94e-01 100.0% 26.9%
3972713 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 74.0 6.70e-01 98.6% 70.5%
3578154 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.86 77.0 7.13e-01 100.0% 77.8%
3955987 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 73.0 6.57e-01 95.8% 68.4%
3663639 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.86 79.0 5.87e-01 100.0% 42.6%
4530655 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 74.0 6.49e-01 95.8% 66.0%
3284011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 74.0 7.53e-01 100.0% 97.1%
3363617 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.85 78.0 7.37e-01 100.0% 85.9%
3303765 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.85 78.0 5.92e-01 100.0% 46.9%
3288090 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.85 74.0 7.50e-01 100.0% 97.1%
3163616 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.85 72.0 6.55e-01 97.2% 70.2%
3297365 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.85 78.0 5.80e-01 100.0% 42.6%
3428775 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.84 77.0 4.95e-01 100.0% 23.5%
4233279 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.84 71.0 4.85e-01 100.0% 27.5%
3329805 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.84 76.0 5.80e-01 100.0% 46.3%
3339569 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.84 76.0 7.08e-01 100.0% 83.1%
3972282 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 73.0 7.08e-01 98.6% 87.3%
5030156 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 75.0 6.28e-01 100.0% 60.0%
4563221 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 73.0 6.60e-01 100.0% 73.7%
4674817 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 73.0 5.40e-01 100.0% 40.0%
4097443 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.82 73.0 5.46e-01 100.0% 41.2%
4497189 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.82 68.0 7.10e-01 100.0% 100.0%
4585396 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 72.0 5.49e-01 100.0% 43.8%
4570076 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 71.0 4.73e-01 100.0% 25.0%
3959252 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 63.0 6.82e-01 88.9% 100.0%
3644937 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.81 73.0 5.59e-01 100.0% 48.1%
3964397 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.81 71.0 6.23e-01 97.2% 65.7%
4112812 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 71.0 6.23e-01 100.0% 66.7%
4524644 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 72.0 5.18e-01 100.0% 35.6%
3163613 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 71.0 7.23e-01 97.2% 100.0%
4258677 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.80 72.0 5.03e-01 100.0% 32.4%
4279016 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 68.0 6.58e-01 100.0% 85.0%
3279596 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.79 69.0 4.98e-01 95.8% 35.8%
5025433 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.79 59.0 6.16e-01 77.8% 92.3%
3964463 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.79 70.0 6.08e-01 98.6% 65.5%
4511316 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.78 71.0 5.67e-01 100.0% 51.8%
4396640 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 68.0 5.67e-01 95.8% 56.7%
4372550 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 68.0 6.30e-01 100.0% 76.7%
5063798 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.78 61.0 6.43e-01 81.9% 98.4%
3971149 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 70.0 6.74e-01 100.0% 88.7%
3959868 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 66.0 6.54e-01 100.0% 89.3%
4965159 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.77 61.0 6.22e-01 83.3% 91.4%
None 0.77 68.0 4.72e-01 95.8% 31.4%
4961952 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.77 64.0 6.35e-01 88.9% 90.7%
4456068 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 69.0 6.13e-01 100.0% 71.0%
5009652 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.77 60.0 6.31e-01 83.3% 96.9%
4033888 101.1.1.489 alpha arrays › HTH › HTH › Three-helical HTH › DUF722 0.76 63.0 5.17e-01 90.3% 88.5%
5034407 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.76 63.0 6.40e-01 88.9% 94.3%
4962234 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.75 61.0 6.09e-01 87.5% 88.0%
5040806 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.72 59.0 5.57e-01 87.5% 76.5%
5054079 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.69 43.0 4.22e-01 87.5% 57.5%
5020331 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 52.0 5.44e-01 80.6% 95.4%
3943810 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.68 53.0 5.54e-01 83.3% 92.3%
3514242 101.1.2.461 alpha arrays › HTH › HTH › winged helix domain › HTH_NPRL3 0.68 51.0 5.19e-01 80.6% 87.1%
5007486 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.67 58.0 5.74e-01 93.1% 94.7%
3312910 603.1.1.111 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › TBCC_N 0.64 40.0 3.75e-01 88.9% 51.1%
3928622 4156.1.1.11 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N 0.62 42.0 3.14e-01 72.2% 38.5%
3546820 110.1.1.17 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CC4_RECK 0.61 43.0 4.77e-01 90.3% 98.2%
4140635 1128.1.1.4 alpha bundles › LYR protein › LYR protein › LYR protein › LYRM2-like 0.59 40.0 3.67e-01 76.4% 51.0%
4452871 192.7.1.3 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.55 40.0 3.79e-01 98.6% 62.2%
3564696 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.53 43.0 3.78e-01 88.9% 86.7%
5006607 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.52 42.0 4.00e-01 98.6% 74.1%
5042057 3871.1.1.0 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST 0.52 43.0 3.96e-01 97.2% 69.9%
3575986 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.51 39.0 2.89e-01 100.0% 31.9%
3411948 601.1.1.43 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Serendipity_A 0.50 43.0 3.70e-01 97.2% 98.3%