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MK448902.1__QBX26237.1__Javan308_0068__00068

Bact-Vir

MK448902.1__QBX26237.1__Javan308_0068__00068

Identity

Accession:
MK448902 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan308

TaxID: 2548100

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 151-265
PDB
Domain cluster: rep: MK448401.1__QBX08689.1__JavanS286_0014__00014__D1-95
D2 high residues 362-447
PDB
Domain cluster: rep: IMGVR_UViG_2654587756_000002-2654587756-2655684301__D19-114
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 34.0 4.11e-01 79.1% 72.7%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 38.0 3.49e-01 91.9% 43.0%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 34.0 3.71e-01 86.0% 58.9%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 37.0 4.16e-01 75.6% 88.9%
4aw8A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 52.0 4.02e-01 100.0% 55.4%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.71e-01 95.3% 57.3%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 37.0 4.11e-01 76.7% 90.3%
2wnhA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.56 40.0 2.66e-01 75.6% 33.8%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.48e-01 74.4% 63.4%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.56 44.0 4.05e-01 84.9% 88.3%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 48.0 3.44e-01 96.5% 46.5%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 3.66e-01 83.7% 66.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.33e-01 89.5% 53.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.89e-01 77.9% 90.5%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 3.46e-01 88.4% 59.2%
2llgA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.40e-01 77.9% 77.6%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 34.0 3.29e-01 87.2% 54.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.53 38.0 3.80e-01 76.7% 72.0%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 38.0 2.58e-01 77.9% 22.5%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 38.0 2.74e-01 75.6% 61.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.86e-01 75.6% 84.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.76e-01 77.9% 87.9%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.31e-01 95.3% 55.0%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 36.0 2.67e-01 73.3% 61.7%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.60e-01 93.0% 83.2%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.50 40.0 3.21e-01 89.5% 57.6%
6xmtA02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.50 43.0 3.52e-01 98.8% 64.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3988067 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 70.0 7.08e-01 98.8% 84.7%
3967584 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.69 42.0 4.41e-01 90.7% 66.3%
3693249 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.68 41.0 3.56e-01 86.0% 39.2%
5019257 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 59.0 4.04e-01 100.0% 27.9%
3882652 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 39.0 3.38e-01 91.9% 36.9%
3472797 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.66 43.0 3.67e-01 96.5% 41.4%
4545039 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 42.0 4.62e-01 75.6% 80.0%
4929019 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.66 36.0 3.56e-01 90.7% 48.4%
5036292 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 37.0 3.47e-01 91.9% 42.7%
5050059 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 37.0 3.41e-01 88.4% 41.7%
4967296 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.64 36.0 3.45e-01 86.0% 46.0%
5020457 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 36.0 3.38e-01 91.9% 42.7%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 40.0 4.37e-01 74.4% 78.6%
5020456 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 35.0 3.31e-01 86.0% 41.8%
5081844 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 36.0 3.26e-01 86.0% 40.8%
5020459 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 36.0 3.44e-01 87.2% 47.5%
3707121 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.49e-01 72.1% 84.0%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.61 34.0 3.38e-01 90.7% 48.4%
3392282 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.60 43.0 2.87e-01 75.6% 36.8%
5035149 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 35.0 3.46e-01 90.7% 52.6%
5066014 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 39.0 3.27e-01 87.2% 40.7%
1298711 9.1.1.13 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › ZinT 0.59 53.0 4.05e-01 100.0% 53.4%
5030959 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 37.0 3.82e-01 100.0% 70.0%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 37.0 4.08e-01 76.7% 87.7%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 37.0 4.13e-01 77.9% 89.2%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 36.0 4.04e-01 75.6% 86.2%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.20e-01 75.6% 87.1%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.56 37.0 4.05e-01 76.7% 87.7%
4975882 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.61e-01 93.0% 56.4%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 36.0 4.02e-01 76.7% 87.7%
3914493 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 47.0 2.89e-01 96.5% 22.8%
4056532 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.56 41.0 3.76e-01 76.7% 87.3%
3867704 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 47.0 3.28e-01 96.5% 44.2%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 37.0 4.05e-01 77.9% 90.8%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 36.0 3.95e-01 76.7% 87.7%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 36.0 3.98e-01 76.7% 89.2%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 37.0 4.06e-01 77.9% 90.8%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.55 37.0 4.02e-01 77.9% 90.8%
5041942 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 40.0 3.62e-01 93.0% 57.4%
3485387 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.14e-01 74.4% 85.3%
5074491 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 41.0 3.67e-01 96.5% 56.0%
4948169 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 38.0 3.45e-01 93.0% 53.9%
5004108 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 36.0 3.44e-01 88.4% 58.0%
4931879 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.54 36.0 3.43e-01 88.4% 58.0%
3550168 4.8.1.27 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N 0.54 38.0 3.78e-01 73.3% 73.3%
5012509 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 38.0 3.46e-01 93.0% 54.2%
5062352 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.55e-01 88.4% 62.0%
3615163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.23e-01 94.2% 87.9%
3542604 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.53 38.0 3.32e-01 88.4% 48.1%
4930095 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 37.0 3.43e-01 93.0% 56.4%
4945684 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.52 39.0 3.55e-01 93.0% 59.1%
4311277 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 43.0 3.27e-01 88.4% 89.7%
1949793 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.52 41.0 3.12e-01 86.0% 91.8%
3226605 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.52 40.0 3.02e-01 89.5% 35.0%
4127062 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.52 42.0 3.07e-01 88.4% 84.3%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.52 37.0 3.40e-01 75.6% 57.1%
168817 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 35.0 3.41e-01 88.4% 62.2%
3267804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.75e-01 97.7% 70.0%
2883135 1.1.7.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.51 43.0 2.95e-01 93.0% 64.5%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.51 33.0 3.62e-01 75.6% 87.7%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.50 33.0 3.56e-01 76.7% 87.7%
D3 medium residues 18-127
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05598.17 best DUF772 53.3 4.50e-14 80.9% 92.9%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tedA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 48.0 4.98e-01 87.3% 78.1%
1ofcX04 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 50.0 5.29e-01 93.6% 97.9%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 44.0 4.67e-01 93.6% 82.5%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 29.0 3.47e-01 72.7% 69.0%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 45.0 4.18e-01 89.1% 66.4%
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.56 46.0 4.74e-01 95.5% 91.6%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.55 26.0 3.08e-01 90.9% 63.3%
2g5cB02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.55 40.0 4.08e-01 77.3% 78.2%
3b1fA02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.54 40.0 4.02e-01 77.3% 77.5%
4ix7A00 1.10.10.2590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain 0.53 40.0 3.96e-01 80.0% 85.1%
2xi9A03 1.10.150.480 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 39.0 4.11e-01 81.8% 88.1%
4f91B04 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.52 41.0 3.81e-01 91.8% 66.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5020443 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.94 83.0 5.83e-01 93.6% 34.2%
4034131 101.1.1.248 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF772 0.93 86.0 8.85e-01 95.5% 100.0%
5019256 101.1.1.248 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF772 0.92 74.0 8.11e-01 85.5% 98.9%
3970986 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 85.0 5.90e-01 100.0% 35.4%
5070929 2484.1.1.332 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 0.89 79.0 5.53e-01 93.6% 33.4%
3949232 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 74.0 4.99e-01 94.5% 28.8%
3587330 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 77.0 5.11e-01 100.0% 28.4%
3954386 101.1.1.248 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF772 0.81 76.0 7.47e-01 100.0% 98.3%
5005232 2484.1.1.332 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 0.80 70.0 5.07e-01 93.6% 36.7%
4933370 101.1.1.248 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF772 0.80 63.0 6.87e-01 81.8% 100.0%
5026084 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 64.0 6.80e-01 95.5% 97.9%
5005290 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.76 48.0 5.85e-01 70.0% 100.0%
4125245 101.1.2.813 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF772 0.76 69.0 6.92e-01 97.3% 100.0%
4932085 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 50.0 6.00e-01 70.9% 100.0%
5035003 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.73 63.0 6.51e-01 98.2% 99.0%
3759371 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 53.0 5.76e-01 97.3% 100.0%
3455559 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 51.0 5.47e-01 90.0% 90.5%
3908710 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 53.0 5.69e-01 91.8% 96.8%
3308030 101.1.1.48 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SLIDE 0.67 51.0 4.79e-01 96.4% 65.9%
3419225 101.1.10.56 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF28509 0.65 52.0 5.22e-01 97.3% 85.5%
3923264 101.1.1.48 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SLIDE 0.63 49.0 4.76e-01 85.5% 75.0%
3905637 101.1.1.48 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SLIDE 0.60 47.0 4.45e-01 87.3% 70.0%
3829031 193.1.1.3 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › Ndc80_HEC 0.60 32.0 3.21e-01 96.4% 48.7%
4556247 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 53.0 4.11e-01 98.2% 98.8%
3354568 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 52.0 5.29e-01 100.0% 100.0%
3599116 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 39.0 4.10e-01 82.7% 77.9%
3466656 2484.1.1.149 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Plant_tran 0.58 51.0 3.85e-01 99.1% 97.1%
3421785 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 44.0 4.23e-01 85.5% 80.0%
4083042 507.1.1.0 ↗ alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related 0.54 41.0 4.05e-01 81.8% 85.8%
4095086 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 25.0 2.90e-01 87.3% 62.7%
D4 medium residues 128-150_268-359_448-525
PDB
Domain cluster: rep: KX077896.1__ANM47701.1__X__00070__D117-246_318-381
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01609.28 best DDE_Tnp_1 79.3 4.80e-22 91.7% 96.5%
PF13751.13 DDE_Tnp_1_6 46.6 5.80e-12 40.4% 55.2%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x6nD00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 55.0 5.73e-01 97.9% 77.0%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.77 54.0 6.11e-01 97.9% 90.8%
5cr4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 55.0 5.23e-01 96.9% 79.0%
3e66A01 3.30.420.230 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region 0.63 48.0 5.20e-01 94.8% 93.8%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.59 46.0 4.85e-01 82.4% 98.9%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.57 33.0 4.09e-01 96.9% 93.0%
4py5A02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 42.0 4.23e-01 85.0% 95.9%
3il0A00 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.52 32.0 3.81e-01 77.2% 91.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034539 105.1.1.84 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › DDE_Tnp_1_6 0.97 72.0 7.99e-01 75.1% 100.0%
3515559 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.91 74.0 8.13e-01 85.5% 100.0%
3590948 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.90 81.0 7.24e-01 99.5% 70.2%
3587330 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 86.0 6.49e-01 100.0% 71.6%
5019257 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 84.0 7.14e-01 100.0% 90.3%
3942207 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.87 73.0 7.74e-01 87.0% 100.0%
5020443 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.87 83.0 6.99e-01 99.0% 65.8%
4954372 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.85 81.0 6.95e-01 99.0% 69.1%
3949232 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 80.0 6.16e-01 99.5% 71.2%
5058150 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.83 75.0 6.61e-01 97.9% 67.8%
3970986 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 79.0 6.55e-01 99.5% 62.1%
4332913 2484.1.1.146 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 0.83 73.0 6.05e-01 100.0% 56.8%
4375215 2484.1.1.146 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 0.82 79.0 6.46e-01 100.0% 60.0%
4662521 2484.1.1.146 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 0.82 64.0 5.51e-01 100.0% 54.0%
4518542 2484.1.1.146 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 0.81 78.0 6.37e-01 100.0% 60.9%
4932086 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.81 70.0 6.95e-01 100.0% 86.5%
4962044 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.79 68.0 5.94e-01 96.4% 63.0%
4968579 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.78 65.0 5.73e-01 97.4% 61.5%
4008870 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.78 74.0 5.75e-01 100.0% 74.6%
4977119 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.78 73.0 6.90e-01 98.4% 87.1%
4514424 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.77 73.0 6.09e-01 100.0% 66.5%
4336164 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.77 59.0 6.09e-01 98.4% 83.9%
5005291 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.77 72.0 6.87e-01 100.0% 86.4%
4974444 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.76 64.0 5.72e-01 99.0% 64.5%
5004369 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.76 69.0 5.74e-01 95.9% 69.8%
4961941 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 71.0 5.57e-01 100.0% 66.2%
4966168 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 69.0 5.61e-01 97.9% 64.9%
3970062 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 59.0 6.04e-01 99.0% 84.3%
3957639 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.75 69.0 5.94e-01 97.4% 84.5%
4010375 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.74 59.0 6.06e-01 97.9% 84.9%
None — 0.74 70.0 5.65e-01 97.9% 74.6%
3961876 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 70.0 5.58e-01 98.4% 71.1%
3964553 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.73 49.0 5.72e-01 90.7% 94.3%
4927589 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.72 62.0 6.29e-01 97.9% 91.6%
5052211 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.72 53.0 6.03e-01 89.6% 98.0%
4312891 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 56.0 5.73e-01 97.4% 87.0%
4039156 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.68 39.0 5.03e-01 80.3% 99.1%
3677504 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.67 37.0 4.54e-01 73.1% 83.2%
3675008 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.65 36.0 3.89e-01 73.1% 61.8%
3924433 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 57.0 5.41e-01 96.4% 80.4%
3960071 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.63 44.0 4.31e-01 71.0% 75.1%
3958247 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 44.0 4.11e-01 71.0% 67.1%
None — 0.62 43.0 4.06e-01 71.0% 66.8%
3394561 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.62 53.0 5.11e-01 96.9% 79.5%
5031294 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.61 48.0 4.95e-01 81.3% 99.5%
5053046 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.61 47.0 4.83e-01 79.8% 98.4%
4401923 2484.1.1.60 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_E_G 0.59 37.0 4.57e-01 80.3% 100.0%
3932544 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.58 52.0 4.92e-01 94.8% 82.2%
4597796 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.55 36.0 4.07e-01 91.7% 86.2%
4108829 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.54 30.0 3.74e-01 78.8% 85.8%
3988559 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.54 30.0 3.69e-01 79.8% 84.2%
2161598 2484.1.1.62 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PRP8_domainIV 0.54 51.0 4.45e-01 100.0% 73.0%
4219785 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.53 29.0 3.61e-01 87.6% 85.8%
3589909 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.52 30.0 3.72e-01 74.6% 89.2%
141236 2484.3.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.51 31.0 3.73e-01 76.7% 89.9%
5077682 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.51 36.0 3.59e-01 72.0% 97.6%
5017621 2003.1.1.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CoA_binding_2 0.50 32.0 3.75e-01 74.1% 91.0%