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MK448903.1__QBX26256.1__Javan310_0019__00019

Bact-Vir

MK448903.1__QBX26256.1__Javan310_0019__00019

Identity

Accession:
MK448903 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4me8A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.70 48.0 3.89e-01 72.1% 95.7%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 3.79e-01 73.8% 64.6%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.75e-01 75.4% 92.3%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.65e-01 72.1% 93.5%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 4.48e-01 73.8% 72.6%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.67 49.0 4.92e-01 80.3% 80.6%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 3.94e-01 82.0% 50.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 4.84e-01 82.0% 89.9%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.27e-01 73.8% 73.8%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.42e-01 72.1% 76.5%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.64 48.0 3.45e-01 83.6% 65.8%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.38e-01 72.1% 88.7%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.63 46.0 4.13e-01 80.3% 58.2%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.63 46.0 4.48e-01 78.7% 89.9%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 44.0 3.92e-01 75.4% 68.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.47e-01 73.8% 91.5%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 46.0 3.65e-01 80.3% 70.5%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 3.90e-01 72.1% 62.5%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 45.0 4.10e-01 80.3% 69.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.38e-01 73.8% 91.5%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.61 44.0 3.78e-01 80.3% 55.0%
1grjA02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.61 42.0 3.92e-01 72.1% 84.4%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.61 41.0 3.80e-01 72.1% 87.8%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 3.68e-01 73.8% 53.0%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.60 43.0 3.00e-01 78.7% 72.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.21e-01 73.8% 88.7%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.59 44.0 3.37e-01 80.3% 86.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 3.94e-01 75.4% 72.6%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 44.0 3.78e-01 83.6% 68.3%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 41.0 3.27e-01 78.7% 59.3%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 42.0 3.82e-01 83.6% 71.3%
2etnA02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.57 39.0 3.76e-01 73.8% 100.0%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.54e-01 73.8% 74.4%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 40.0 3.88e-01 78.7% 74.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.39e-01 82.0% 75.0%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 39.0 3.48e-01 75.4% 88.4%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 42.0 3.37e-01 83.6% 94.8%
2ln7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.55 39.0 3.07e-01 77.0% 72.1%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 42.0 3.13e-01 88.5% 79.3%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.45e-01 78.7% 61.9%
4kx7A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 36.0 3.34e-01 72.1% 84.5%
1bunB00 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.54 31.0 3.12e-01 70.5% 54.1%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 37.0 3.11e-01 73.8% 84.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 47.0 4.50e-01 100.0% 97.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.31e-01 100.0% 87.9%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 43.0 3.83e-01 96.7% 88.5%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 2.96e-01 70.5% 49.1%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 2.97e-01 73.8% 74.1%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989651 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 51.0 3.55e-01 73.8% 68.3%
3940730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 51.0 4.36e-01 73.8% 62.1%
4007999 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.72 51.0 3.91e-01 73.8% 41.5%
3597690 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 52.0 4.94e-01 77.0% 88.6%
3515495 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 50.0 4.27e-01 73.8% 55.8%
3266698 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.71 49.0 3.78e-01 72.1% 56.3%
3577224 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 50.0 4.33e-01 73.8% 60.0%
3393347 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 49.0 4.32e-01 73.8% 60.0%
3629536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.19e-01 75.4% 61.1%
3999723 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 47.0 3.57e-01 73.8% 35.3%
4646593 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 47.0 3.70e-01 73.8% 42.2%
3627842 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.14e-01 73.8% 61.1%
2157301 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.67 47.0 4.42e-01 73.8% 87.7%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.36e-01 73.8% 74.7%
3414912 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 47.0 3.96e-01 75.4% 52.4%
3881119 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 47.0 4.31e-01 73.8% 65.0%
3629830 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 47.0 4.20e-01 73.8% 62.4%
3840679 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 46.0 3.97e-01 73.8% 54.7%
3883165 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 46.0 3.90e-01 73.8% 53.0%
3883161 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 46.0 4.11e-01 75.4% 60.0%
153172 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 45.0 3.95e-01 72.1% 57.8%
4133685 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.65 45.0 4.10e-01 72.1% 88.7%
3823780 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.64 48.0 4.57e-01 82.0% 90.7%
1291984 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 44.0 4.00e-01 72.1% 62.7%
4353037 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.64 44.0 4.02e-01 72.1% 86.7%
3407854 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 45.0 3.89e-01 73.8% 54.7%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 45.0 4.06e-01 73.8% 65.9%
3570368 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 44.0 3.72e-01 72.1% 55.0%
3519774 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 44.0 3.72e-01 73.8% 53.3%
3814411 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 45.0 3.77e-01 73.8% 58.1%
3768095 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 44.0 3.84e-01 73.8% 55.8%
3609629 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 46.0 3.93e-01 73.8% 56.8%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.18e-01 73.8% 68.0%
3407820 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 45.0 4.02e-01 73.8% 60.0%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 45.0 3.98e-01 75.4% 58.9%
3938389 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 44.0 3.96e-01 73.8% 63.5%
3913334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.24e-01 73.8% 74.3%
3547084 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 45.0 4.01e-01 73.8% 57.8%
3504417 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 44.0 3.92e-01 75.4% 61.1%
4239904 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.62 43.0 3.87e-01 72.1% 83.5%
3855972 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.62 42.0 4.19e-01 70.5% 76.9%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 46.0 3.52e-01 80.3% 40.0%
3688068 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 46.0 3.52e-01 80.3% 38.0%
3226400 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.62 43.0 3.80e-01 73.8% 71.1%
3619813 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 43.0 3.52e-01 73.8% 47.0%
4403870 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 44.0 3.87e-01 77.0% 54.7%
3492016 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.61 44.0 3.91e-01 75.4% 61.1%
4066106 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.61 42.0 3.88e-01 72.1% 88.7%
4217174 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 45.0 4.38e-01 80.3% 84.3%
3774108 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 43.0 3.72e-01 73.8% 53.7%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.61 43.0 4.03e-01 73.8% 72.0%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.61 43.0 4.10e-01 75.4% 86.7%
3596676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 41.0 3.73e-01 75.4% 61.1%
3913687 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 41.0 3.72e-01 75.4% 57.8%
3373330 4.1.1.337 beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.59 41.0 3.88e-01 73.8% 69.3%
4002896 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 41.0 3.72e-01 75.4% 60.0%
3973332 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 44.0 4.18e-01 83.6% 82.7%
3791839 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 41.0 3.84e-01 78.7% 77.5%
3960362 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 47.0 3.91e-01 95.1% 74.8%
3833030 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.57 43.0 3.47e-01 86.9% 59.3%
3507692 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 44.0 3.45e-01 90.2% 62.7%
3503815 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 40.0 3.68e-01 77.0% 63.5%
3792195 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 40.0 3.51e-01 77.0% 64.0%
3622643 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 40.0 3.68e-01 78.7% 74.1%
3547093 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 39.0 3.51e-01 75.4% 61.1%
3881111 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 39.0 3.52e-01 77.0% 62.2%
4055256 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 38.0 3.47e-01 75.4% 60.0%
3926623 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 38.0 3.65e-01 77.0% 86.3%
3716521 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 36.0 2.32e-01 72.1% 17.0%
3593239 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.08e-01 82.0% 80.7%
3510207 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.52 41.0 3.07e-01 96.7% 45.8%
3606615 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.51 37.0 3.33e-01 78.7% 78.9%
4389184 11.1.1.1065 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25971 0.51 40.0 3.55e-01 96.7% 80.0%