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MK448904.1__QBX26304.1__Javan316_0015__00015
Bact-VirMK448904.1__QBX26304.1__Javan316_0015__00015
Identity
- Accession:
- MK448904 ↗
- Kingdom:
- phage
Quality
84.1
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-86
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bteA05 | 3.10.20.590 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 42.0 | 4.74e-01 | 86.6% | 100.0% |
| 5ah5A01 | 3.10.20.590 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 41.0 | 4.66e-01 | 85.4% | 100.0% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 40.0 | 4.41e-01 | 86.6% | 89.2% |
| 1i7qA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.57 | 46.0 | 2.83e-01 | 89.0% | 84.7% |
| 5is8A02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.56 | 39.0 | 3.04e-01 | 73.2% | 94.5% |
| 1qwyA01 | 2.40.50.290 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 33.0 | 3.73e-01 | 78.0% | 77.4% |
| 1zxhA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 36.0 | 4.19e-01 | 84.1% | 100.0% |
| 5r4qA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 43.0 | 3.30e-01 | 86.6% | 53.9% |
| 1wsrA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.54 | 40.0 | 3.91e-01 | 79.3% | 73.6% |
| 3gg6A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 44.0 | 3.70e-01 | 90.2% | 60.4% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 39.0 | 3.17e-01 | 78.0% | 90.4% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.54 | 41.0 | 4.20e-01 | 85.4% | 88.5% |
| 6xj6A01 | 2.40.440.10 | Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.53 | 45.0 | 3.61e-01 | 92.7% | 92.9% |
| 1wv8A00 | 3.30.2390.10 | Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like | 0.52 | 36.0 | 3.85e-01 | 79.3% | 85.9% |
| 5tkwA01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 35.0 | 2.75e-01 | 90.2% | 34.1% |
| 1iktA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.51 | 43.0 | 3.86e-01 | 92.7% | 87.0% |
| 1bqnA05 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 41.0 | 3.59e-01 | 92.7% | 87.8% |
| 1pz4A00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.50 | 42.0 | 3.82e-01 | 92.7% | 85.0% |
| 3kptB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.62e-01 | 100.0% | 65.7% |
| 3bexA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 43.0 | 3.64e-01 | 95.1% | 95.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3242014 | 213.1.1.81 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF7596 | 0.69 | 47.0 | 4.15e-01 | 85.4% | 48.0% |
| 3625250 | 213.1.1.81 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF7596 | 0.66 | 45.0 | 3.71e-01 | 85.4% | 38.7% |
| 3649449 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.60 | 51.0 | 4.55e-01 | 100.0% | 78.4% |
| 3674876 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.59 | 50.0 | 4.36e-01 | 100.0% | 88.4% |
| 3650852 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.57 | 49.0 | 4.41e-01 | 100.0% | 80.0% |
| 5071251 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.57 | 38.0 | 3.37e-01 | 78.0% | 44.8% |
| 3441542 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.55 | 47.0 | 4.21e-01 | 100.0% | 76.8% |
| 3194923 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 45.0 | 3.18e-01 | 91.5% | 85.1% |
| 2429582 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.54 | 31.0 | 3.80e-01 | 85.4% | 90.2% |
| 3451717 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.54 | 46.0 | 4.61e-01 | 100.0% | 97.6% |
| 4296285 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.54 | 38.0 | 4.20e-01 | 84.1% | 100.0% |
| 3963914 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.54 | 44.0 | 4.62e-01 | 86.6% | 97.3% |
| None | — | 0.54 | 41.0 | 2.46e-01 | 84.1% | 42.9% | |
| 3965019 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.53 | 43.0 | 3.11e-01 | 86.6% | 39.5% |
| 3707367 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.53 | 41.0 | 3.31e-01 | 86.6% | 53.1% |
| 5025177 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 38.0 | 3.84e-01 | 100.0% | 80.0% |
| 3277633 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.52 | 33.0 | 3.40e-01 | 85.4% | 66.3% |
| 3060384 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.52 | 44.0 | 3.83e-01 | 92.7% | 81.3% |
| 3284653 | 2003.1.2.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase | 0.52 | 40.0 | 2.50e-01 | 86.6% | 55.1% |
| 3372482 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.52 | 47.0 | 3.40e-01 | 100.0% | 38.6% |
| 1721589 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.51 | 43.0 | 3.76e-01 | 92.7% | 81.1% |
| 3063000 | 268.1.1.5 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N | 0.51 | 43.0 | 3.59e-01 | 97.6% | 72.9% |
| 3978292 | 2484.1.1.251 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26691 | 0.50 | 46.0 | 2.92e-01 | 100.0% | 22.1% |
| 4996145 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.50 | 43.0 | 3.87e-01 | 97.6% | 91.7% |