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MK448910.1__QBX26599.1__Javan336_0009__00009

Bact-Vir

MK448910.1__QBX26599.1__Javan336_0009__00009

Identity

Accession:
MK448910 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan336

TaxID: 2548112

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-54
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14168.12 best YjzC 36.8 5.70e-09 100.0% 72.7%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.61 51.0 3.93e-01 100.0% 56.2%
5o60c00 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.61 48.0 4.68e-01 95.2% 98.0%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.77e-01 100.0% 59.8%
1x5lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 3.92e-01 100.0% 61.4%
5zi7A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.59 46.0 3.87e-01 100.0% 60.9%
4psrA03 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.57 46.0 3.83e-01 100.0% 88.8%
3kptA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.53e-01 100.0% 52.8%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 46.0 3.48e-01 100.0% 77.2%
1fnfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.70e-01 100.0% 56.4%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.61e-01 100.0% 61.0%
2qz5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 42.0 3.16e-01 100.0% 44.7%
2dkmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.60e-01 100.0% 48.1%
2e8yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 42.0 3.47e-01 100.0% 42.2%
5z1aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.46e-01 100.0% 56.8%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 3.22e-01 100.0% 56.9%
3n40P04 2.60.40.2400 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C 0.56 45.0 3.91e-01 100.0% 60.3%
2bb3A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 43.0 3.53e-01 100.0% 43.8%
3jxvA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 43.0 3.34e-01 100.0% 73.3%
3i4tA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 41.0 3.09e-01 100.0% 38.4%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.44e-01 100.0% 65.7%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 3.33e-01 100.0% 35.3%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 43.0 3.16e-01 100.0% 37.4%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 41.0 3.30e-01 100.0% 62.5%
1npsA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.54 43.0 3.59e-01 100.0% 94.3%
2dsiA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 41.0 3.01e-01 100.0% 37.1%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 40.0 3.04e-01 85.7% 54.2%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.48e-01 100.0% 64.5%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 42.0 2.87e-01 97.6% 89.0%
4pbxA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.34e-01 100.0% 55.0%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.53 42.0 3.50e-01 95.2% 86.9%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 3.03e-01 100.0% 30.4%
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.17e-01 100.0% 50.0%
4jg5A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 2.76e-01 100.0% 41.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939503 10.35.1.1 ↗ beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N 0.66 54.0 3.34e-01 100.0% 41.8%
4960811 11.14.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.59 46.0 3.79e-01 100.0% 68.4%
5081312 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.58 45.0 3.00e-01 97.6% 19.5%
3914331 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 48.0 3.89e-01 100.0% 54.7%
3870544 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 45.0 3.73e-01 100.0% 58.9%
3727810 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 45.0 3.20e-01 100.0% 29.4%
5007598 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.56 44.0 3.53e-01 100.0% 41.1%
3797555 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.65e-01 100.0% 68.4%
4075153 11.1.1.560 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKAT_KLD 0.56 44.0 3.38e-01 100.0% 44.8%
3897274 284.1.1.12 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TR61B_FKBP-like 0.55 45.0 3.95e-01 100.0% 91.4%
4968615 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 41.0 3.19e-01 100.0% 52.6%
3273772 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.73e-01 100.0% 68.4%
3479047 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 38.0 3.00e-01 100.0% 64.4%
3934897 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.46e-01 100.0% 56.7%