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MK448912.1__QBX26733.1__Javan340_0008__00036
Bact-VirMK448912.1__QBX26733.1__Javan340_0008__00036
Identity
- Accession:
- MK448912 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 47-119
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qr4A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.72 | 25.0 | 3.17e-01 | 71.2% | 46.8% |
| 2y9wA00 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.55 | 48.0 | 3.08e-01 | 100.0% | 58.1% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.55 | 47.0 | 3.84e-01 | 98.6% | 61.0% |
| 3gwmA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 36.0 | 3.01e-01 | 80.8% | 38.0% |
| 1ceeB00 | 3.90.810.10 | Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain | 0.55 | 30.0 | 3.24e-01 | 90.4% | 62.7% |
| 7wu7501 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 41.0 | 3.50e-01 | 82.2% | 80.2% |
| 1xa3A01 | 3.40.50.10540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 | 0.54 | 42.0 | 2.81e-01 | 83.6% | 32.0% |
| 5cq2A02 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.53 | 28.0 | 3.47e-01 | 79.5% | 86.0% |
| 1dctA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 2.89e-01 | 76.7% | 56.1% |
| 2bddA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 34.0 | 2.77e-01 | 74.0% | 38.6% |
| 1qmeA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.52 | 36.0 | 3.30e-01 | 72.6% | 75.0% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 36.0 | 2.69e-01 | 78.1% | 33.9% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.51 | 39.0 | 2.79e-01 | 83.6% | 88.8% |
| 6kguA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.51 | 40.0 | 3.83e-01 | 90.4% | 74.4% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3380586 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.57 | 44.0 | 2.85e-01 | 83.6% | 59.7% |
| 3175074 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 51.0 | 2.94e-01 | 98.6% | 13.9% |
| 4469646 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.57 | 45.0 | 3.00e-01 | 89.0% | 89.5% |
| 3724170 | 603.5.1.17 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › SYF2 | 0.56 | 39.0 | 3.53e-01 | 75.3% | 83.6% |
| 3714022 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.56 | 31.0 | 3.37e-01 | 71.2% | 61.7% |
| 3391689 | 5054.1.1.1 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan | 0.55 | 50.0 | 3.69e-01 | 100.0% | 42.8% |
| 3280153 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.54 | 42.0 | 2.73e-01 | 87.7% | 61.0% |
| 3301960 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.54 | 38.0 | 2.70e-01 | 75.3% | 59.4% |
| 3834208 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.54 | 39.0 | 2.76e-01 | 78.1% | 25.8% |
| 3272533 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 40.0 | 2.71e-01 | 83.6% | 44.0% |
| 4975223 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 39.0 | 2.57e-01 | 80.8% | 58.6% |
| 3938116 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 45.0 | 3.18e-01 | 98.6% | 86.7% |
| 3689761 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.53 | 41.0 | 2.72e-01 | 91.8% | 74.4% |
| 3641526 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.52 | 39.0 | 2.79e-01 | 82.2% | 65.3% |
| 6657 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.52 | 40.0 | 2.78e-01 | 87.7% | 44.5% |
| 4029392 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.51 | 37.0 | 2.75e-01 | 76.7% | 43.8% |
| 3195109 | 109.2.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase | 0.51 | 44.0 | 2.62e-01 | 98.6% | 26.7% |
| 5065401 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.51 | 42.0 | 2.49e-01 | 91.8% | 50.8% |
| 3432841 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.51 | 40.0 | 3.22e-01 | 98.6% | 40.6% |
| 3960022 | 2002.1.1.65 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DAHP_synth_2 | 0.51 | 37.0 | 2.65e-01 | 78.1% | 31.7% |
| 4028506 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.51 | 40.0 | 2.59e-01 | 87.7% | 25.5% |
| 3272300 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 43.0 | 2.79e-01 | 98.6% | 50.8% |
| 3705134 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 40.0 | 2.64e-01 | 93.2% | 56.5% |
| 1407164 | 2484.1.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin,Thymosin | 0.50 | 36.0 | 2.70e-01 | 78.1% | 68.5% |
| 3742155 | 109.21.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 | 0.50 | 43.0 | 2.62e-01 | 100.0% | 77.2% |
| 4219320 | 3702.1.1.0 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain | 0.50 | 44.0 | 3.82e-01 | 100.0% | 65.2% |
| 4163015 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.50 | 43.0 | 2.76e-01 | 100.0% | 42.0% |
| 3273908 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 43.0 | 2.73e-01 | 94.5% | 60.3% |