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MK448920.1__QBX27168.1__Javan372_0032__00032
Bact-VirMK448920.1__QBX27168.1__Javan372_0032__00032
Identity
- Accession:
- MK448920 ↗
- Kingdom:
- phage
Quality
89.8
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-49
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.66 | 44.0 | 4.69e-01 | 93.8% | 80.5% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 47.0 | 3.23e-01 | 87.5% | 25.0% |
| 4g5aA00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 37.0 | 3.01e-01 | 72.9% | 38.4% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 39.0 | 2.60e-01 | 89.6% | 66.8% |
| 4ad8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 2.69e-01 | 100.0% | 28.5% |
| 2v1xA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.18e-01 | 91.7% | 85.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3735831 | 9.1.1.37 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 | 0.75 | 63.0 | 4.14e-01 | 95.8% | 23.5% |
| 3313451 | 3082.1.1.1 ↗ | extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › Upf2 | 0.63 | 42.0 | 4.49e-01 | 70.8% | 100.0% |
| 3769484 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.58 | 45.0 | 3.93e-01 | 89.6% | 80.0% |
| 4989875 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.55 | 41.0 | 2.66e-01 | 91.7% | 16.0% |
| 4021308 | 2485.2.1.0 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 0.55 | 42.0 | 3.43e-01 | 95.8% | 42.6% |
| 6353 | 331.11.1.1 ↗ | a+b two layers › TBP-like › Rbstp2229 protein › Rbstp2229 protein › DUF1885 | 0.55 | 38.0 | 2.97e-01 | 77.1% | 47.6% |
| 4179803 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.53 | 41.0 | 2.76e-01 | 85.4% | 62.5% |
| 2989153 | 3926.1.1.2 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › Vma22_CCDC115 | 0.53 | 45.0 | 3.83e-01 | 95.8% | 60.8% |
| 3579172 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.53 | 39.0 | 2.65e-01 | 91.7% | 18.3% |
| 3230839 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.50 | 43.0 | 3.35e-01 | 93.8% | 88.0% |