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MK448921.1__QBX27193.1__Javan374_0002__00057

Bact-Vir

MK448921.1__QBX27193.1__Javan374_0002__00057

Identity

Accession:
MK448921 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 106-156
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.69 59.0 5.14e-01 96.1% 98.7%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 55.0 4.52e-01 96.1% 51.6%
3qwxX01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 53.0 4.31e-01 100.0% 56.2%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.64 46.0 4.63e-01 82.4% 80.0%
1h9oA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 53.0 4.29e-01 100.0% 52.8%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.63 49.0 2.83e-01 94.1% 8.5%
1p9eA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.63 51.0 3.26e-01 98.0% 26.5%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 45.0 3.15e-01 100.0% 63.8%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.56 44.0 4.06e-01 94.1% 94.4%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.55 45.0 3.64e-01 98.0% 82.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.51e-01 76.5% 66.7%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 45.0 2.76e-01 100.0% 23.7%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.84e-01 94.1% 69.9%
1zq1A02 3.40.50.1170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › L-asparaginase, N-terminal domain 0.50 41.0 2.80e-01 100.0% 72.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030628 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 56.0 3.18e-01 90.2% 8.0%
3958547 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 62.0 5.74e-01 100.0% 93.8%
3992660 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 59.0 4.70e-01 100.0% 58.2%
4360499 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 57.0 4.46e-01 100.0% 53.9%
2105336 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.67 56.0 4.14e-01 100.0% 71.1%
3506772 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.67 54.0 4.15e-01 94.1% 38.4%
3777778 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 56.0 3.61e-01 100.0% 39.2%
3480379 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 55.0 4.42e-01 96.1% 57.1%
8551 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.63 45.0 4.54e-01 82.4% 80.0%
3385678 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.58 46.0 3.24e-01 100.0% 60.3%
4030408 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.57 45.0 3.12e-01 100.0% 62.5%
4373974 296.1.1.0 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.51 42.0 3.32e-01 100.0% 64.8%
D2 high residues 160-285
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.81 60.0 6.50e-01 100.0% 92.3%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.80 60.0 6.48e-01 100.0% 91.6%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 44.0 5.01e-01 100.0% 88.3%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 41.0 4.91e-01 100.0% 97.4%
4e2oA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 42.0 4.82e-01 100.0% 89.8%
3qnfC01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.65 48.0 4.13e-01 96.8% 47.8%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.63 57.0 5.54e-01 100.0% 96.4%
3dhuA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 36.0 4.47e-01 100.0% 94.7%
1j0hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 39.0 4.57e-01 100.0% 94.0%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 40.0 4.37e-01 100.0% 80.4%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.61 44.0 3.85e-01 95.2% 49.2%
3au0A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 50.0 4.80e-01 96.0% 76.5%
4kx7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.61 46.0 3.91e-01 96.8% 47.0%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 37.0 4.43e-01 100.0% 96.2%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.60 32.0 3.96e-01 78.6% 86.5%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.59 54.0 5.31e-01 100.0% 97.7%
3fawA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 35.0 3.99e-01 81.0% 80.4%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 38.0 4.40e-01 78.6% 96.6%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 39.0 4.43e-01 95.2% 98.9%
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 30.0 3.90e-01 93.7% 100.0%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 3.99e-01 83.3% 82.7%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 4.02e-01 100.0% 81.0%
1cfbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.96e-01 84.1% 82.1%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 3.73e-01 99.2% 79.8%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 36.0 3.96e-01 100.0% 84.2%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 34.0 3.74e-01 84.1% 78.2%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 37.0 4.07e-01 99.2% 92.6%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 36.0 4.09e-01 81.7% 100.0%
3vgiA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.53 47.0 3.73e-01 100.0% 93.7%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.89e-01 100.0% 86.3%
1od3A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 4.31e-01 95.2% 86.3%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 32.0 3.77e-01 79.4% 98.7%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.52 32.0 3.48e-01 88.1% 74.5%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.68e-01 100.0% 80.0%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.52 34.0 3.70e-01 87.3% 80.0%
3hnmA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 4.07e-01 95.2% 85.6%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 4.18e-01 95.2% 84.4%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 32.0 3.87e-01 77.0% 100.0%
5jtwA02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 35.0 3.87e-01 82.5% 89.0%
1w9sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 42.0 4.13e-01 95.2% 86.6%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5031981 4081.1.1.7 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.65 47.0 4.25e-01 95.2% 54.3%
3390411 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.63 49.0 4.06e-01 96.8% 46.2%
1169923 12.1.1.45 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Bac_A_amyl_C 0.63 36.0 4.49e-01 100.0% 95.9%
5043436 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.62 45.0 4.08e-01 94.4% 54.3%
1811514 11.1.1.65 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CopC 0.62 40.0 4.37e-01 100.0% 80.4%
3262565 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 36.0 4.24e-01 96.0% 87.1%
5045644 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.60 45.0 4.10e-01 95.2% 57.6%
4217901 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.59 40.0 4.34e-01 100.0% 87.0%
148806 12.1.1.6 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_42C 0.58 32.0 4.09e-01 99.2% 100.0%
4975837 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 37.0 4.24e-01 96.0% 88.9%
3756125 11.1.1.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL6Ra-bind 0.58 39.0 4.15e-01 87.3% 80.0%
4653283 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.58 44.0 3.73e-01 96.0% 48.1%
4209707 12.1.1.6 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_42C 0.58 33.0 4.08e-01 99.2% 98.6%
4466626 10.32.1.244 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.58 40.0 4.27e-01 96.8% 81.8%
4460991 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.58 32.0 3.84e-01 90.5% 83.7%
3795920 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.56 38.0 4.19e-01 93.7% 88.0%
5083968 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 44.0 4.42e-01 95.2% 83.2%
5011692 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 50.0 4.73e-01 100.0% 94.2%
3502208 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 4.04e-01 100.0% 83.0%
3201926 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 39.0 4.15e-01 99.2% 86.7%
3233895 10.32.1.218 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.55 37.0 4.19e-01 87.3% 95.6%
4970326 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 36.0 4.02e-01 79.4% 88.4%
1485 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.97e-01 84.1% 82.9%
4124695 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 4.13e-01 83.3% 95.6%
3216927 11.1.1.905 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ILCR1 0.54 38.0 3.94e-01 84.1% 78.3%
5065315 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 4.21e-01 84.9% 86.1%
4982345 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 4.04e-01 84.9% 85.7%
4636885 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.53 32.0 3.94e-01 71.4% 98.7%
134241 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.52 37.0 3.99e-01 100.0% 89.3%
3245971 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 45.0 4.26e-01 97.6% 91.6%
4398429 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.52 30.0 3.57e-01 93.7% 87.5%
5038947 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.86e-01 82.5% 98.8%
3185335 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 33.0 3.66e-01 88.1% 86.3%
5040389 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.86e-01 100.0% 78.5%
4854964 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.50 32.0 3.60e-01 87.3% 90.7%
3804238 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 40.0 3.84e-01 86.5% 83.4%