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MK448921.1__QBX27202.1__Javan374_0011__00048

Bact-Vir

MK448921.1__QBX27202.1__Javan374_0011__00048

Identity

Accession:
MK448921 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-123
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.79 73.0 6.98e-01 100.0% 92.0%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.77 60.0 6.42e-01 100.0% 92.4%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.75 38.0 4.58e-01 80.0% 72.8%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.71 38.0 4.33e-01 80.8% 69.7%
4lfhD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 39.0 4.62e-01 90.8% 77.6%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 39.0 4.47e-01 88.3% 76.1%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 38.0 4.23e-01 78.3% 69.6%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 55.0 5.76e-01 98.3% 95.4%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.67 49.0 5.41e-01 96.7% 96.8%
2wngA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 43.0 4.59e-01 90.0% 73.8%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 42.0 4.82e-01 91.7% 89.5%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.64 58.0 5.30e-01 100.0% 93.8%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.63 56.0 5.12e-01 96.7% 84.0%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 41.0 4.68e-01 85.8% 88.0%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 39.0 4.16e-01 82.5% 71.0%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 40.0 4.33e-01 90.0% 80.0%
3fbqA01 2.60.40.1630 Mainly Beta › Sandwich › Immunoglobulin-like › bacillus anthracis domain 0.60 41.0 3.85e-01 94.2% 58.3%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.59 42.0 4.20e-01 98.3% 71.2%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.59 40.0 3.88e-01 95.0% 60.4%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 4.43e-01 90.8% 81.7%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.58 53.0 4.41e-01 100.0% 88.1%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 4.53e-01 91.7% 83.9%
1cwvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.99e-01 92.5% 76.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.58 51.0 4.90e-01 97.5% 87.5%
3o4oC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.33e-01 91.7% 82.7%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 35.0 3.98e-01 98.3% 85.1%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.56 50.0 4.50e-01 97.5% 72.9%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 3.72e-01 88.3% 64.3%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.55 42.0 3.37e-01 80.8% 64.3%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.90e-01 90.8% 72.1%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.54 49.0 4.62e-01 99.2% 85.1%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 36.0 4.11e-01 100.0% 92.1%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 32.0 3.47e-01 79.2% 69.3%
3f7eA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 45.0 4.49e-01 100.0% 86.7%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.53 40.0 3.47e-01 80.8% 56.8%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.52 43.0 3.32e-01 86.7% 62.8%
2e1bA02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.52 45.0 4.45e-01 94.2% 89.1%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 4.36e-01 91.7% 98.0%
1r3eA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.52 40.0 3.30e-01 81.7% 70.1%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 46.0 4.34e-01 100.0% 80.3%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.51 40.0 4.02e-01 83.3% 95.2%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.51 40.0 3.97e-01 83.3% 95.2%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.92e-01 100.0% 74.1%
4j37A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.50 38.0 3.27e-01 80.0% 51.1%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3513366 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 77.0 6.68e-01 100.0% 94.9%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.82 74.0 7.32e-01 96.7% 100.0%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 71.0 6.86e-01 98.3% 91.2%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.77 71.0 6.49e-01 100.0% 80.8%
3969448 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 64.0 6.78e-01 95.0% 100.0%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.76 62.0 6.64e-01 95.0% 99.0%
4929587 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 55.0 6.31e-01 95.8% 100.0%
5082881 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 70.0 6.94e-01 99.2% 98.4%
3981654 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.76 64.0 6.66e-01 95.0% 98.2%
3425342 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 37.0 4.66e-01 80.8% 78.7%
184986 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.74 66.0 6.62e-01 98.3% 96.8%
3603127 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 51.0 5.77e-01 95.0% 95.6%
4943313 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 37.0 4.41e-01 78.3% 70.6%
4157825 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 67.0 6.57e-01 100.0% 94.6%
3966429 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.72 50.0 5.70e-01 94.2% 95.6%
3972305 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 50.0 5.70e-01 94.2% 95.6%
4988102 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.72 60.0 6.28e-01 95.8% 96.4%
3580020 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 65.0 5.48e-01 98.3% 81.0%
4393593 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.72 52.0 5.74e-01 96.7% 94.7%
2595159 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.71 65.0 5.83e-01 100.0% 78.9%
4031285 1.1.13.64 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.71 50.0 5.71e-01 96.7% 97.8%
3317802 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.71 44.0 4.90e-01 90.8% 78.9%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.70 64.0 6.26e-01 100.0% 93.1%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.70 64.0 5.66e-01 100.0% 74.4%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 50.0 4.98e-01 97.5% 71.2%
1560729 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.69 52.0 4.93e-01 100.0% 66.0%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.69 63.0 5.66e-01 100.0% 80.5%
3974464 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 41.0 5.00e-01 79.2% 96.0%
1914511 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.67 48.0 4.74e-01 99.2% 70.1%
3968971 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.67 42.0 4.71e-01 95.0% 83.3%
4247994 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.67 51.0 5.55e-01 96.7% 98.0%
3974369 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 44.0 5.03e-01 95.8% 94.1%
4888819 1.1.13.10 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_1 0.66 52.0 5.44e-01 95.8% 89.2%
4344991 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.66 51.0 4.98e-01 97.5% 74.6%
4379249 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 47.0 4.69e-01 99.2% 72.0%
3973637 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 44.0 4.78e-01 95.0% 83.0%
3809348 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 44.0 4.33e-01 91.7% 63.8%
4028502 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.65 47.0 4.72e-01 90.0% 75.0%
4094235 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 47.0 4.68e-01 100.0% 72.8%
4319057 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 46.0 4.73e-01 100.0% 76.5%
3267872 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 42.0 4.15e-01 95.8% 61.5%
4952364 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.64 39.0 4.51e-01 94.2% 85.9%
4551243 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 46.0 4.58e-01 100.0% 72.0%
184718 1.1.13.16 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_12 0.63 56.0 5.12e-01 96.7% 84.0%
3967003 1.1.13.35 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_11 0.62 58.0 5.48e-01 100.0% 93.6%
4273561 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.62 45.0 4.35e-01 95.8% 66.7%
4538400 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 46.0 4.55e-01 100.0% 73.1%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 47.0 4.61e-01 100.0% 72.9%
5056723 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 40.0 4.48e-01 95.0% 84.2%
3224729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 45.0 4.94e-01 94.2% 100.0%
3259730 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 44.0 4.64e-01 100.0% 86.4%
4077036 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.59 42.0 3.44e-01 74.2% 64.4%
4945745 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.58 45.0 3.57e-01 81.7% 82.3%
3943689 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 45.0 4.65e-01 95.0% 88.2%
4103483 304.102.1.2 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD 0.58 51.0 4.23e-01 98.3% 88.6%
4649925 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.58 44.0 3.70e-01 80.0% 76.1%
4933784 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.57 43.0 3.59e-01 80.8% 77.1%
4190012 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.57 43.0 3.55e-01 80.8% 60.0%
4030345 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 44.0 3.58e-01 84.2% 64.0%
5063453 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 43.0 3.49e-01 82.5% 82.0%
5036917 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.55 42.0 3.90e-01 82.5% 63.3%
4455935 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.55 42.0 3.49e-01 81.7% 59.6%
3232202 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.17e-01 91.7% 72.1%
4103990 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 41.0 3.41e-01 81.7% 66.5%
4330191 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.54 43.0 3.59e-01 85.0% 61.9%
3910402 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.54 41.0 3.30e-01 80.8% 69.8%
4223490 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 41.0 3.46e-01 81.7% 69.8%
4646504 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.54 42.0 3.58e-01 83.3% 56.0%
3664467 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.54 44.0 4.34e-01 92.5% 81.5%
5074869 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 43.0 3.29e-01 85.8% 45.6%
4126423 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.53 41.0 3.40e-01 81.7% 63.7%
5001314 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 40.0 3.21e-01 80.8% 49.4%
4214918 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.52 42.0 3.33e-01 85.0% 57.5%
4977671 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.52 39.0 3.60e-01 83.3% 60.0%
3220081 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.52 39.0 3.10e-01 79.2% 57.5%
4466500 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.51 39.0 3.08e-01 81.7% 56.4%
4675861 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.51 41.0 3.29e-01 86.7% 69.7%
5028702 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 43.0 4.12e-01 100.0% 79.3%
4927424 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 44.0 4.27e-01 95.0% 85.2%
D2 high residues 128-230
PDB