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MK448923.1__QBX27288.1__Javan380_0001__00048

Bact-Vir

MK448923.1__QBX27288.1__Javan380_0001__00048

Identity

Accession:
MK448923 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan380

TaxID: 2548137

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-149
PDB
Domain cluster: rep: NC_028697.1__YP_009191553.1__AU092_gp46__00046__D5-141
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05382.20 best Amidase_5 46.8 4.30e-12 100.0% 81.0%
D2 high residues 168-279
PDB
Domain cluster: rep: KU981050.1__ANU78869.1__X__00026__D198-310
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16775.11 best ZoocinA_TRD 98.9 2.50e-28 98.2% 97.2%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ls0101 2.40.50.670 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme 0.79 71.0 7.09e-01 100.0% 95.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 29.0 3.72e-01 97.3% 67.7%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.65 28.0 3.88e-01 90.2% 84.3%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.65 28.0 3.74e-01 91.1% 76.8%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 28.0 3.73e-01 92.0% 78.6%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 31.0 4.21e-01 74.1% 96.4%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 28.0 3.53e-01 95.5% 70.3%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 28.0 3.58e-01 98.2% 82.8%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 30.0 3.62e-01 99.1% 78.9%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 33.0 3.87e-01 89.3% 84.4%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 33.0 3.73e-01 92.0% 79.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 30.0 3.88e-01 81.2% 96.7%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 24.0 3.29e-01 95.5% 86.3%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 3.84e-01 83.0% 83.1%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.50 26.0 3.26e-01 86.6% 86.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184821 6062.1.1.1 ↗ beta barrels › Target recognition domain of zoocin A › Target recognition domain of zoocin A › Target recognition domain of zoocin A › ZoocinA_TRD 0.79 71.0 6.79e-01 100.0% 85.2%
5026267 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.72 35.0 4.25e-01 71.4% 70.7%
5071741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 29.0 3.97e-01 97.3% 71.7%
3931602 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 33.0 4.09e-01 93.8% 70.0%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 29.0 4.07e-01 99.1% 80.0%
5055172 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.65 28.0 3.82e-01 96.4% 80.0%
3242941 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 33.0 4.04e-01 91.1% 87.1%
3282006 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 25.0 3.47e-01 75.0% 80.0%
4391061 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 44.0 4.29e-01 100.0% 73.3%
3213991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 33.0 3.96e-01 98.2% 88.6%
4049072 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.56 39.0 3.98e-01 98.2% 72.7%
3620698 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.56 33.0 3.61e-01 88.4% 69.5%
5032554 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 41.0 4.02e-01 100.0% 72.0%
4951352 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 41.0 4.04e-01 99.1% 74.2%
4623446 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 42.0 4.06e-01 99.1% 73.4%
4311691 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 40.0 3.85e-01 99.1% 65.9%
4103327 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 40.0 3.97e-01 99.1% 73.2%
4346153 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 42.0 4.02e-01 99.1% 74.8%
3788921 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.51 32.0 3.42e-01 99.1% 71.0%
4026991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 39.0 3.72e-01 83.9% 88.8%