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MK448923.1__QBX27316.1__Javan380_0029__00020
Bact-VirMK448923.1__QBX27316.1__Javan380_0029__00020
Identity
- Accession:
- MK448923 ↗
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-73
Domain cluster:
rep: ON464759.1__UTV60862.1__JDFnp1_74__00074__D5-72
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13560.13 best | HTH_31 | 44.2 | 2.70e-11 | 84.3% | 85.9% |
| PF12844.14 | HTH_19 | 34.0 | 3.00e-08 | 82.9% | 90.6% |
| PF13443.13 | HTH_26 | 23.8 | 5.90e-05 | 81.4% | 92.1% |
| PF01381.29 | HTH_3 | 48.0 | 1.50e-12 | 78.6% | 100.0% |
D2
medium
residues 80-131
Domain cluster:
rep: MN689530.1__QGT53599.1__CHPC974_001264__00045__D5-60
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 45.0 | 4.00e-01 | 75.0% | 42.5% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.65 | 51.0 | 3.82e-01 | 88.5% | 75.4% |
| 2jt1A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 4.44e-01 | 90.4% | 90.1% |
| 3i8bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 44.0 | 2.83e-01 | 84.6% | 95.7% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.57 | 40.0 | 4.25e-01 | 90.4% | 84.8% |
| 1mwrA03 | 3.30.1390.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Penicillin-binding protein 2a; domain 3 | 0.54 | 42.0 | 3.86e-01 | 86.5% | 94.3% |
| 1j20A02 | 3.90.1260.10 | Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 | 0.54 | 41.0 | 2.83e-01 | 90.4% | 81.2% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 41.0 | 3.73e-01 | 100.0% | 62.5% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.52 | 43.0 | 3.17e-01 | 100.0% | 63.1% |
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.50 | 45.0 | 3.02e-01 | 100.0% | 45.7% |
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.50 | 37.0 | 3.46e-01 | 82.7% | 91.2% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587703 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.70 | 58.0 | 5.91e-01 | 96.2% | 96.0% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.68 | 60.0 | 5.12e-01 | 100.0% | 62.4% |
| 5053985 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.62 | 44.0 | 3.74e-01 | 78.8% | 79.6% |
| 165942 | 101.1.2.63 ↗ | alpha arrays › HTH › HTH › winged helix domain › FaeA | 0.60 | 49.0 | 4.46e-01 | 90.4% | 91.4% |
| 1758716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.60 | 43.0 | 4.35e-01 | 90.4% | 75.0% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.56 | 44.0 | 4.50e-01 | 84.6% | 92.0% |
| 5010219 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.56 | 39.0 | 4.38e-01 | 75.0% | 97.5% |
| 3421939 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.56 | 42.0 | 3.18e-01 | 90.4% | 34.4% |
| 4944643 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 39.0 | 3.16e-01 | 82.7% | 86.7% |
| 3267216 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 42.0 | 3.46e-01 | 90.4% | 88.6% |
| 3277475 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 39.0 | 3.08e-01 | 82.7% | 67.9% |
| 3536617 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.54 | 39.0 | 3.14e-01 | 86.5% | 83.8% |
| 4927372 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 39.0 | 3.20e-01 | 84.6% | 65.2% |
| 5053568 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 37.0 | 2.87e-01 | 76.9% | 48.1% |
| 4418856 | 223.2.1.23 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 | 0.52 | 37.0 | 2.69e-01 | 82.7% | 42.1% |
| 3603040 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.52 | 46.0 | 3.69e-01 | 100.0% | 53.0% |
| 4980684 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 37.0 | 2.26e-01 | 86.5% | 20.6% |
| 5008603 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.50 | 36.0 | 2.61e-01 | 82.7% | 47.4% |