←Back to structures

MK448924.1__QBX27366.1__Javan384_0031__00034

Bact-Vir

MK448924.1__QBX27366.1__Javan384_0031__00034

Identity

Accession:
MK448924 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan384

TaxID: 2548140

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-50
PDB
D2 high residues 56-120
PDB
Domain cluster: rep: NC_071083.1__YP_010683437.1__PQF09_gp43__00043__D112-175
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.76 45.0 5.48e-01 72.3% 95.1%
7q5yG01 3.10.20.740 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 45.0 3.99e-01 90.8% 64.4%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.38e-01 84.6% 87.9%
3tqtA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 35.0 3.51e-01 100.0% 63.2%
6qcbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 38.0 3.36e-01 75.4% 97.9%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 46.0 3.56e-01 98.5% 90.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.52 37.0 4.13e-01 100.0% 98.0%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 37.0 2.99e-01 78.5% 94.9%
1r6xA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 37.0 2.72e-01 81.5% 85.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890187 6.1.1.8 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › AbfB 0.75 67.0 4.97e-01 100.0% 89.7%
4106198 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.69 63.0 5.02e-01 100.0% 96.8%
3997244 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.56 35.0 4.10e-01 89.2% 93.3%
3330429 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.52 35.0 2.97e-01 70.8% 79.1%
3600630 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.51 43.0 4.11e-01 92.3% 97.3%
5026915 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 35.0 3.91e-01 95.4% 98.0%