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MK448925.1__QBX27434.1__Javan386_0035__00023
Bact-VirMK448925.1__QBX27434.1__Javan386_0035__00023
Identity
- Accession:
- MK448925 ↗
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-76
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.68 | 44.0 | 3.91e-01 | 70.3% | 46.7% |
| 6gpkA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.63 | 39.0 | 3.44e-01 | 98.6% | 42.2% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.62 | 42.0 | 3.73e-01 | 70.3% | 48.6% |
| 2pmeA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 50.0 | 3.41e-01 | 97.3% | 29.2% |
| 1x9yA01 | 3.10.500.10 | Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain | 0.58 | 50.0 | 3.94e-01 | 100.0% | 58.2% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.55 | 34.0 | 3.64e-01 | 93.2% | 70.8% |
| 3hlzA02 | 1.20.120.1090 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 45.0 | 3.78e-01 | 90.5% | 76.0% |
| 6qu3A02 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 3.36e-01 | 94.6% | 90.1% |
| 4jbeB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 44.0 | 3.03e-01 | 93.2% | 82.7% |
| 3ip3A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 40.0 | 3.09e-01 | 87.8% | 45.3% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 47.0 | 2.94e-01 | 100.0% | 84.0% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 45.0 | 3.97e-01 | 97.3% | 87.6% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 45.0 | 3.85e-01 | 98.6% | 82.9% |
| 1xdiA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 40.0 | 3.55e-01 | 87.8% | 84.0% |
| 3tdvA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.52 | 44.0 | 3.18e-01 | 93.2% | 69.9% |
| 2h21B01 | 3.90.1410.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 | 0.52 | 41.0 | 2.83e-01 | 86.5% | 56.5% |
| 5ekcF01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 41.0 | 2.92e-01 | 95.9% | 66.2% |
| 1ifqB00 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.51 | 44.0 | 3.64e-01 | 98.6% | 53.9% |
| 2gzaA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 32.0 | 2.87e-01 | 94.6% | 42.6% |
| 4zm3B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 34.0 | 2.90e-01 | 71.6% | 59.9% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 40.0 | 3.48e-01 | 90.5% | 55.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3970136 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.66 | 43.0 | 3.83e-01 | 70.3% | 46.7% |
| 4932814 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 30.0 | 4.02e-01 | 89.2% | 94.3% |
| 5059610 | 148.1.3.403 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RNA_pol_Rpb1_5 | 0.62 | 54.0 | 4.31e-01 | 100.0% | 64.5% |
| 4993093 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.62 | 41.0 | 2.74e-01 | 70.3% | 35.8% |
| 4143716 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.62 | 42.0 | 3.71e-01 | 70.3% | 48.2% |
| 3607341 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.61 | 48.0 | 3.17e-01 | 85.1% | 21.8% |
| 4989647 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.61 | 30.0 | 3.46e-01 | 90.5% | 61.8% |
| 3646105 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 50.0 | 3.10e-01 | 91.9% | 36.4% |
| 3789900 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.60 | 36.0 | 2.93e-01 | 98.6% | 32.6% |
| 5038289 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 40.0 | 3.33e-01 | 73.0% | 54.1% |
| 3594759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 31.0 | 3.96e-01 | 87.8% | 97.5% |
| 3212281 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.56 | 47.0 | 3.20e-01 | 98.6% | 29.8% |
| 4944411 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 40.0 | 3.33e-01 | 85.1% | 41.5% |
| 4031020 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.55 | 47.0 | 3.14e-01 | 100.0% | 97.9% |
| 4973549 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 43.0 | 3.63e-01 | 89.2% | 78.5% |
| 4025792 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.53 | 41.0 | 3.29e-01 | 89.2% | 39.5% |
| 4944923 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 37.0 | 3.18e-01 | 83.8% | 42.3% |
| 5066982 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.53 | 40.0 | 3.36e-01 | 83.8% | 70.7% |
| 3279130 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.53 | 44.0 | 3.89e-01 | 98.6% | 67.5% |
| 5045719 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 41.0 | 3.49e-01 | 86.5% | 60.5% |
| 4997112 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 38.0 | 3.23e-01 | 100.0% | 45.4% |
| 4088089 | 304.48.1.39 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N | 0.51 | 42.0 | 2.84e-01 | 94.6% | 48.4% |
| 4632831 | 319.1.1.14 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 | 0.50 | 33.0 | 3.09e-01 | 91.9% | 51.6% |