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MK448925.1__QBX27456.1__Javan386_0057__00001

Bact-Vir

MK448925.1__QBX27456.1__Javan386_0057__00001

Identity

Accession:
MK448925 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan386

TaxID: 2548142

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-114
PDB
Domain cluster: rep: SRR1747045_scaffold_1_prodigal-single.1__X__X__00179__D38-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00239.27 best Resolvase 102.6 2.90e-29 99.1% 73.3%
D2 high residues 150-248
PDB
Domain cluster: rep: OR521081.1__WNO27914.1__SEA_HALO3_46__00046__D16-107
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07508.20 best Recombinase 63.5 2.70e-17 73.7% 85.3%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6dnwA01 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.89 80.0 7.38e-01 100.0% 76.4%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.85 79.0 6.24e-01 100.0% 76.8%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 38.0 4.27e-01 71.7% 79.2%
2m3aA00 1.10.10.1900 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like 0.64 38.0 4.53e-01 75.8% 89.6%
4c0aA02 1.10.1000.11 Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 0.59 41.0 3.91e-01 72.7% 93.2%
2ksnA01 1.20.225.20 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Ub domain-containing protein, DC-UbP/UBTD2, N-terminal domain 0.54 36.0 3.91e-01 100.0% 85.9%
2yorA00 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.53 43.0 3.05e-01 89.9% 67.6%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 32.0 3.65e-01 79.8% 88.2%
6bfnB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 41.0 3.34e-01 88.9% 72.8%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.71e-01 87.9% 87.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939690 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.97 80.0 8.01e-01 100.0% 84.0%
5032641 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.94 85.0 8.14e-01 96.0% 83.6%
4932316 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.94 77.0 7.74e-01 99.0% 84.0%
4969809 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.93 78.0 7.51e-01 89.9% 78.2%
4115814 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.92 88.0 7.26e-01 100.0% 75.6%
3282557 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.91 87.0 6.81e-01 100.0% 82.7%
5038787 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.89 77.0 7.43e-01 94.9% 80.9%
1145762 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.89 80.0 7.22e-01 100.0% 72.3%
3962001 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.89 85.0 7.37e-01 100.0% 78.6%
4072866 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.89 84.0 7.26e-01 100.0% 88.3%
5030856 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.88 84.0 7.65e-01 100.0% 80.8%
3590291 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.88 83.0 7.09e-01 100.0% 79.3%
4944490 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.88 71.0 7.47e-01 100.0% 93.3%
4007589 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.86 81.0 7.37e-01 100.0% 87.2%
4998605 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.84 79.0 7.59e-01 100.0% 88.2%
3588264 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 60.0 6.31e-01 93.9% 81.1%
3956288 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.83 78.0 6.95e-01 100.0% 77.8%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.74 37.0 5.08e-01 70.7% 96.0%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.72 37.0 5.00e-01 71.7% 98.0%
3290651 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 44.0 4.04e-01 74.7% 47.7%
3504540 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 38.0 4.84e-01 73.7% 94.5%
3812799 101.1.1.291 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26175 0.67 39.0 4.69e-01 73.7% 87.7%
3588086 101.1.1.45 ↗ alpha arrays › HTH › HTH › Three-helical HTH › BrxA 0.62 40.0 4.83e-01 91.9% 100.0%
3905735 101.1.2.94 ↗ alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.61 39.0 4.20e-01 75.8% 75.3%
3190754 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.60 36.0 4.16e-01 81.8% 84.3%
5041402 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 34.0 4.00e-01 71.7% 86.2%
3264072 101.1.1.70 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SANT_DAMP1_like 0.59 41.0 4.01e-01 92.9% 65.5%
3184216 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.54 34.0 3.94e-01 73.7% 95.4%
3339443 101.1.2.94 ↗ alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.54 40.0 4.08e-01 93.9% 81.1%
3687544 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 45.0 3.81e-01 89.9% 90.0%
4032499 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 3.80e-01 90.9% 85.3%
4992091 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 46.0 2.99e-01 99.0% 30.1%
3493350 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.52 37.0 3.75e-01 73.7% 98.0%
5057835 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.51 31.0 2.65e-01 70.7% 33.5%
4518394 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.51 36.0 3.90e-01 74.7% 97.6%