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MK448930.1__QBX27688.1__Javan406_0038__00038

Bact-Vir

MK448930.1__QBX27688.1__Javan406_0038__00038

Identity

Accession:
MK448930 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan406

TaxID: 2548152

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-43
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.59 49.0 2.80e-01 100.0% 15.1%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.56 44.0 3.99e-01 100.0% 86.8%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.56 39.0 3.06e-01 82.4% 33.7%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.51 38.0 2.55e-01 97.1% 29.6%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 37.0 2.95e-01 97.1% 43.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3704402 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 50.0 3.55e-01 100.0% 31.3%
5018703 815.1.1.0 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.58 48.0 3.58e-01 97.1% 48.9%
3340613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 41.0 3.52e-01 100.0% 45.0%
3721004 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.56 39.0 3.06e-01 79.4% 78.9%
4011259 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.52 42.0 3.01e-01 100.0% 30.0%
3925804 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.51 38.0 2.65e-01 100.0% 55.0%