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MK448933.1__QBX27832.1__Javan420_0032__00032

Bact-Vir

MK448933.1__QBX27832.1__Javan420_0032__00032

Identity

Accession:
MK448933 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan420

TaxID: 2548157

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-96
PDB
Domain cluster: rep: NC_071083.1__YP_010683437.1__PQF09_gp43__00043__D112-175
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tqtA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 36.0 3.58e-01 100.0% 61.8%
7q5yG01 3.10.20.740 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 44.0 3.82e-01 90.3% 64.4%
6qcbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 37.0 3.23e-01 71.0% 97.9%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.22e-01 85.5% 87.9%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 2.97e-01 100.0% 42.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890187 6.1.1.8 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › AbfB 0.73 65.0 4.77e-01 100.0% 89.1%
3970872 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 39.0 2.77e-01 100.0% 21.0%
4485519 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.56e-01 88.7% 78.2%
3899237 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.50 40.0 3.41e-01 90.3% 78.2%