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MK448933.1__QBX27833.1__Javan420_0033__00033
Bact-VirMK448933.1__QBX27833.1__Javan420_0033__00033
Identity
- Accession:
- MK448933 ↗
- Kingdom:
- phage
Quality
90.4
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-152
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mamA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.70 | 39.0 | 5.04e-01 | 77.3% | 98.8% |
| 2olsA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 54.0 | 5.07e-01 | 99.3% | 98.4% |
| 2o5rA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 29.0 | 3.61e-01 | 76.0% | 90.2% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.50 | 38.0 | 3.55e-01 | 78.7% | 66.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944062 | 206.1.3.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 | 0.72 | 45.0 | 3.84e-01 | 79.3% | 40.0% |
| 3614670 | 206.1.3.83 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CBP66 | 0.72 | 55.0 | 4.39e-01 | 80.7% | 53.6% |
| 3209497 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.70 | 55.0 | 4.15e-01 | 82.0% | 46.9% |
| 3542430 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.68 | 53.0 | 4.19e-01 | 82.0% | 44.2% |
| 4980312 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.60 | 39.0 | 3.39e-01 | 80.0% | 42.7% |
| 4937952 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.60 | 53.0 | 4.40e-01 | 100.0% | 55.0% |
| 4970531 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.58 | 53.0 | 4.07e-01 | 100.0% | 56.4% |
| 4099186 | 219.1.1.21 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 | 0.52 | 39.0 | 3.61e-01 | 78.0% | 90.0% |
| 7384 | 219.1.1.21 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 | 0.50 | 38.0 | 3.55e-01 | 78.7% | 66.5% |
D2
high
residues 173-300
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5i47B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.75 | 44.0 | 5.12e-01 | 100.0% | 80.0% |
| 4hnvB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.68 | 49.0 | 3.54e-01 | 100.0% | 27.5% |
| 2pn1A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.68 | 47.0 | 4.85e-01 | 100.0% | 75.0% |
| 4dimA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.63 | 46.0 | 3.85e-01 | 100.0% | 45.3% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.59 | 31.0 | 4.06e-01 | 89.8% | 97.0% |
| 1tkeA03 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.57 | 23.0 | 3.37e-01 | 89.1% | 82.8% |
| 3er0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 29.0 | 3.75e-01 | 96.9% | 95.9% |
| 3lp8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 48.0 | 4.75e-01 | 100.0% | 94.9% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 29.0 | 3.17e-01 | 83.6% | 64.9% |
| 1vkzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 47.0 | 4.66e-01 | 100.0% | 95.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1789279 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.75 | 44.0 | 3.92e-01 | 100.0% | 43.3% |
| 5071931 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.64 | 35.0 | 3.24e-01 | 100.0% | 41.9% |
| 4976812 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.61 | 45.0 | 3.46e-01 | 100.0% | 35.5% |
| 5072851 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.61 | 46.0 | 3.47e-01 | 100.0% | 34.7% |
| 3989327 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.61 | 46.0 | 3.46e-01 | 100.0% | 32.6% |
| 4338742 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.61 | 47.0 | 3.87e-01 | 100.0% | 47.0% |
| 3261392 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.60 | 43.0 | 3.58e-01 | 100.0% | 43.2% |
| None | — | 0.58 | 46.0 | 3.84e-01 | 100.0% | 48.6% | |
| 4935496 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.57 | 48.0 | 3.98e-01 | 100.0% | 50.9% |
| None | — | 0.56 | 46.0 | 3.84e-01 | 100.0% | 51.4% | |
| 4998912 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.52 | 46.0 | 3.48e-01 | 100.0% | 41.4% |
| 5076731 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.52 | 45.0 | 3.45e-01 | 100.0% | 42.1% |
| 4046845 | 11.1.1.1106 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25835 | 0.52 | 27.0 | 3.19e-01 | 90.6% | 70.5% |
| 3483499 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 29.0 | 3.68e-01 | 93.8% | 96.0% |
| 5061621 | 206.1.3.25 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 | 0.51 | 44.0 | 3.27e-01 | 100.0% | 37.8% |