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MK448934.1__QBX27884.1__Javan422_0011__00011
Bact-VirMK448934.1__QBX27884.1__Javan422_0011__00011
Identity
- Accession:
- MK448934 ↗
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-39
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 48.7 | 9.40e-13 | 97.1% | 70.2% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m08A00 | 3.90.540.10 | Alpha Beta › Alpha-Beta Complex › Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain › Colicin/pyocin, DNase domain | 0.94 | 83.0 | 5.36e-01 | 97.1% | 26.0% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.83 | 69.0 | 5.29e-01 | 100.0% | 45.8% |
| 2hf1A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 36.0 | 3.33e-01 | 82.4% | 49.1% |
| 3h6eB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 3.15e-01 | 100.0% | 48.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.95 | 82.0 | 6.51e-01 | 97.1% | 50.8% |
| 3278018 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.94 | 76.0 | 6.47e-01 | 91.2% | 56.4% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.93 | 81.0 | 6.52e-01 | 100.0% | 52.3% |
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.93 | 83.0 | 6.44e-01 | 100.0% | 48.6% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.91 | 79.0 | 5.70e-01 | 100.0% | 36.2% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.91 | 81.0 | 5.48e-01 | 100.0% | 55.7% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.90 | 79.0 | 5.44e-01 | 100.0% | 53.6% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.86 | 72.0 | 5.21e-01 | 100.0% | 35.1% |
| 3965880 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.83 | 66.0 | 4.99e-01 | 100.0% | 37.1% |
| 4951302 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.81 | 64.0 | 5.40e-01 | 100.0% | 50.8% |
| 5019258 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.81 | 69.0 | 5.22e-01 | 100.0% | 41.2% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.80 | 68.0 | 5.25e-01 | 100.0% | 44.0% |
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.79 | 63.0 | 5.14e-01 | 100.0% | 47.1% |
| 3952818 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.79 | 62.0 | 5.02e-01 | 100.0% | 44.6% |
| 3950953 | 377.1.1.78 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 | 0.78 | 63.0 | 5.12e-01 | 100.0% | 47.1% |
| 4517886 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.78 | 68.0 | 6.22e-01 | 100.0% | 77.8% |
| 4839749 | 3821.1.1.0 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain | 0.78 | 63.0 | 5.89e-01 | 100.0% | 73.3% |
| 4989310 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.78 | 61.0 | 3.89e-01 | 100.0% | 17.5% |
| 3955812 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 62.0 | 4.68e-01 | 100.0% | 37.6% |
| 4999440 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.76 | 61.0 | 4.70e-01 | 100.0% | 38.8% |
| 4998487 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.75 | 60.0 | 4.48e-01 | 100.0% | 34.7% |
| 3415045 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.59 | 47.0 | 3.85e-01 | 97.1% | 97.1% |
| 3903334 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.55 | 40.0 | 2.52e-01 | 79.4% | 32.5% |
| 3958471 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.53 | 37.0 | 3.67e-01 | 91.2% | 72.5% |