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MK448940.1__QBX28199.1__Javan444_0037__00016
Bact-VirMK448940.1__QBX28199.1__Javan444_0037__00016
Identity
- Accession:
- MK448940 ↗
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-60
Domain cluster:
rep: OQ504960.1__WID41994.1__X__00022__D3-68
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 55.0 | 5.48e-01 | 96.6% | 76.7% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 53.0 | 5.17e-01 | 98.3% | 71.2% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 54.0 | 5.26e-01 | 100.0% | 72.7% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 51.0 | 5.56e-01 | 94.9% | 91.8% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.64 | 51.0 | 5.10e-01 | 98.3% | 85.0% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.64 | 50.0 | 4.34e-01 | 100.0% | 55.4% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 54.0 | 5.10e-01 | 100.0% | 82.2% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.61 | 42.0 | 3.69e-01 | 72.9% | 89.6% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 33.0 | 2.52e-01 | 72.9% | 19.6% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.60 | 39.0 | 3.61e-01 | 100.0% | 51.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 53.0 | 3.81e-01 | 100.0% | 46.7% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.59 | 41.0 | 3.89e-01 | 100.0% | 59.2% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 39.0 | 3.31e-01 | 71.2% | 43.4% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 35.0 | 3.62e-01 | 94.9% | 61.4% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 39.0 | 3.25e-01 | 71.2% | 45.0% |
| 4asnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.59e-01 | 78.0% | 94.4% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.56 | 36.0 | 3.61e-01 | 98.3% | 63.9% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 46.0 | 4.03e-01 | 96.6% | 79.8% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.62e-01 | 81.4% | 89.2% |
| 3l22A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 44.0 | 2.71e-01 | 93.2% | 88.8% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.50e-01 | 83.1% | 89.1% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.54 | 40.0 | 3.23e-01 | 100.0% | 36.8% |
| 4ewfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 46.0 | 3.07e-01 | 100.0% | 65.7% |
| 2oqgB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.20e-01 | 76.3% | 68.5% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 45.0 | 2.99e-01 | 96.6% | 53.8% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.31e-01 | 71.2% | 89.3% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.53 | 39.0 | 2.44e-01 | 81.4% | 28.2% |
| 4nhxA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.53 | 45.0 | 3.06e-01 | 96.6% | 46.4% |
| 3akcA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 36.0 | 2.51e-01 | 72.9% | 69.7% |
| 7lgjA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 36.0 | 2.48e-01 | 74.6% | 35.1% |
| 4hw0C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.15e-01 | 72.9% | 78.5% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.16e-01 | 86.4% | 50.0% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.18e-01 | 72.9% | 90.2% |
| 2o0bA02 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.51 | 35.0 | 2.49e-01 | 72.9% | 36.3% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.51 | 39.0 | 2.72e-01 | 86.4% | 22.5% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.18e-01 | 78.0% | 81.8% |
| 4a6dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 2.98e-01 | 79.7% | 44.7% |
| 4j80A02 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.50 | 37.0 | 3.60e-01 | 79.7% | 93.9% |
| 7txnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 3.49e-01 | 89.8% | 100.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972526 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 68.0 | 6.44e-01 | 100.0% | 90.0% |
| 5004476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 56.0 | 5.44e-01 | 100.0% | 73.8% |
| 3036710 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 55.0 | 5.42e-01 | 100.0% | 76.2% |
| 4941512 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 53.0 | 5.04e-01 | 100.0% | 67.1% |
| 4185009 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 54.0 | 5.30e-01 | 100.0% | 80.0% |
| 4950876 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.67 | 46.0 | 2.90e-01 | 88.1% | 13.5% |
| 4302032 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.66 | 53.0 | 5.14e-01 | 100.0% | 80.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.66 | 50.0 | 4.39e-01 | 100.0% | 54.4% |
| 3588755 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 57.0 | 5.30e-01 | 100.0% | 85.1% |
| 4033484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 54.0 | 5.27e-01 | 100.0% | 87.5% |
| 4954114 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.63 | 51.0 | 5.09e-01 | 91.5% | 100.0% |
| 4130412 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.63 | 48.0 | 4.31e-01 | 84.7% | 89.4% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.62 | 42.0 | 4.58e-01 | 100.0% | 91.1% |
| 3574017 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.62 | 39.0 | 3.69e-01 | 100.0% | 51.4% |
| 1003912 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.61 | 42.0 | 3.69e-01 | 72.9% | 89.6% |
| 3597533 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.60 | 51.0 | 4.35e-01 | 100.0% | 80.0% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.60 | 40.0 | 4.31e-01 | 100.0% | 91.1% |
| 3907235 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.60 | 39.0 | 2.72e-01 | 98.3% | 17.8% |
| 3539015 | 4357.1.1.5 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 | 0.60 | 50.0 | 4.02e-01 | 96.6% | 56.5% |
| 3742432 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.60 | 47.0 | 3.73e-01 | 86.4% | 78.4% |
| 3749060 | 4357.1.1.5 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 | 0.60 | 49.0 | 4.52e-01 | 94.9% | 82.5% |
| 3911194 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.59 | 50.0 | 4.57e-01 | 96.6% | 85.0% |
| 3875549 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.59 | 39.0 | 2.80e-01 | 98.3% | 21.0% |
| 3509233 | 304.120.1.12 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF26955 | 0.58 | 51.0 | 4.66e-01 | 100.0% | 98.8% |
| 3513328 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.58 | 45.0 | 4.33e-01 | 91.5% | 74.3% |
| 3252861 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.58 | 39.0 | 2.73e-01 | 100.0% | 19.5% |
| 3267853 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.57 | 38.0 | 2.68e-01 | 100.0% | 19.1% |
| 3962617 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.56 | 38.0 | 2.70e-01 | 100.0% | 20.5% |
| 3727822 | 7527.1.1.2 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 | 0.56 | 40.0 | 2.45e-01 | 76.3% | 23.5% |
| 3612587 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.56 | 46.0 | 4.59e-01 | 91.5% | 100.0% |
| 3376685 | 3164.1.1.3 ↗ | few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › DYW_deaminase | 0.56 | 33.0 | 3.82e-01 | 88.1% | 87.5% |
| 3982462 | 4132.1.1.1 ↗ | alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC | 0.56 | 38.0 | 2.46e-01 | 71.2% | 93.0% |
| 3930342 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.55 | 37.0 | 3.78e-01 | 100.0% | 74.5% |
| 5038375 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.55 | 37.0 | 2.67e-01 | 98.3% | 21.0% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.55 | 37.0 | 2.61e-01 | 100.0% | 18.7% |
| 3513222 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.55 | 38.0 | 2.37e-01 | 74.6% | 43.7% |
| 3228583 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 37.0 | 3.08e-01 | 72.9% | 43.5% |
| 4179317 | 3236.1.1.5 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 | 0.53 | 40.0 | 2.47e-01 | 81.4% | 28.4% |
| 3587556 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.52 | 46.0 | 4.41e-01 | 100.0% | 85.7% |
| 3387865 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 39.0 | 3.39e-01 | 83.1% | 60.0% |
| 3688820 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.52 | 38.0 | 2.47e-01 | 81.4% | 86.1% |
| 3930427 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.52 | 38.0 | 3.79e-01 | 100.0% | 76.9% |
| 3523136 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.52 | 37.0 | 2.44e-01 | 79.7% | 82.8% |
| 3838661 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 38.0 | 3.35e-01 | 83.1% | 64.4% |
| 3638869 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 39.0 | 2.40e-01 | 88.1% | 14.7% |