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MK448960.1__QBX29364.1__Javan492_0050__00050

Bact-Vir

MK448960.1__QBX29364.1__Javan492_0050__00050

Identity

Accession:
MK448960 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07902.17 best Gp58 92.9 2.30e-26 100.0% 8.9%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.63 51.0 3.36e-01 92.5% 46.2%
2xbuA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 47.0 3.36e-01 96.2% 47.0%
2no4B01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 44.0 3.39e-01 96.2% 39.7%
2hmcA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 2.89e-01 100.0% 28.7%
6j5tB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 37.0 2.72e-01 83.0% 82.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995801 7555.1.1.0 a/b three-layered sandwiches › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related › Alpha-2,3/8-sialyltransferase CstII-related 0.58 49.0 3.22e-01 96.2% 86.1%
4027333 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 47.0 3.55e-01 98.1% 76.6%
D2 medium residues 77-183
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07902.17 best Gp58 173.3 1.00e-50 100.0% 17.6%