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MK448964.1__QBX29547.1__Javan502_0025__00028
Bact-VirMK448964.1__QBX29547.1__Javan502_0025__00028
Identity
- Accession:
- MK448964 ↗
- Kingdom:
- phage
Quality
84.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-40
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 49.0 | 3.41e-01 | 79.5% | 35.9% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 44.0 | 2.55e-01 | 97.4% | 7.0% |
| 1b9wA02 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.66 | 44.0 | 4.47e-01 | 87.2% | 68.4% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 45.0 | 3.76e-01 | 92.3% | 40.5% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 48.0 | 4.10e-01 | 84.6% | 66.2% |
| 1n8yC02 | 2.10.220.10 | Mainly Beta › Ribbon › Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A domain 2 › Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2 | 0.63 | 47.0 | 3.37e-01 | 82.1% | 28.6% |
| 1vq8U00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.63 | 43.0 | 4.04e-01 | 71.8% | 71.7% |
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.60 | 45.0 | 3.42e-01 | 79.5% | 66.3% |
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.59 | 38.0 | 3.98e-01 | 94.9% | 72.7% |
| 2kxqA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.59 | 38.0 | 4.00e-01 | 89.7% | 80.0% |
| 3fbyA01 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.58 | 46.0 | 4.30e-01 | 87.2% | 74.5% |
| 5a48B00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.57 | 42.0 | 3.27e-01 | 84.6% | 67.7% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 38.0 | 3.48e-01 | 89.7% | 43.6% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 42.0 | 3.42e-01 | 84.6% | 78.5% |
| 2b0uD02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.55 | 44.0 | 3.72e-01 | 94.9% | 93.1% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.55 | 46.0 | 4.02e-01 | 100.0% | 67.7% |
| 5xukA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.54 | 41.0 | 3.06e-01 | 87.2% | 54.8% |
| 2i4lA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 42.0 | 2.52e-01 | 87.2% | 23.2% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 45.0 | 3.17e-01 | 97.4% | 36.2% |
| 5suvC00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.53 | 40.0 | 2.90e-01 | 87.2% | 31.2% |
| 2bc4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 2.76e-01 | 74.4% | 61.5% |
| 3rayA00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.52 | 42.0 | 2.76e-01 | 89.7% | 74.8% |
| 2jyeA01 | 2.10.25.160 | Mainly Beta › Ribbon › Laminin › Granulin | 0.52 | 42.0 | 3.78e-01 | 100.0% | 65.6% |
| 4c3iG02 | 2.40.50.1060 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 38.0 | 2.75e-01 | 87.2% | 30.2% |
| 5fm5P00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 2.84e-01 | 74.4% | 43.9% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.52 | 38.0 | 3.13e-01 | 87.2% | 58.3% |
| 1vc9A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 35.0 | 2.53e-01 | 71.8% | 34.4% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942265 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 48.0 | 3.82e-01 | 76.9% | 65.9% |
| 3276253 | 388.1.1.0 ↗ | few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like | 0.67 | 46.0 | 4.50e-01 | 92.3% | 64.4% |
| 4346946 | 387.2.1.0 ↗ | few secondary structure elements › omega toxin-like | 0.67 | 49.0 | 4.98e-01 | 82.1% | 82.1% |
| 5050812 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.66 | 50.0 | 3.08e-01 | 94.9% | 13.3% |
| 91487 | 389.1.1.15 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_MSP1_1 | 0.65 | 42.0 | 4.10e-01 | 79.5% | 57.8% |
| 3701507 | 4138.1.1.0 ↗ | few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat | 0.64 | 45.0 | 3.90e-01 | 82.1% | 44.3% |
| 3389712 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.63 | 45.0 | 3.29e-01 | 82.1% | 80.0% |
| 4932487 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.62 | 42.0 | 3.59e-01 | 71.8% | 54.3% |
| 3599123 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 45.0 | 2.69e-01 | 84.6% | 37.7% |
| 3597778 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.60 | 43.0 | 3.02e-01 | 92.3% | 24.0% |
| 3372361 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.60 | 52.0 | 5.18e-01 | 100.0% | 100.0% |
| 3315810 | 376.1.1.40 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 | 0.60 | 43.0 | 4.12e-01 | 76.9% | 68.9% |
| 3877952 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.60 | 40.0 | 3.98e-01 | 87.2% | 62.5% |
| 3907975 | 377.1.1.50 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 | 0.60 | 41.0 | 3.97e-01 | 71.8% | 64.4% |
| 3480463 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.59 | 41.0 | 4.28e-01 | 87.2% | 82.9% |
| 3508098 | 73.1.1.4 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Pellino_FHA | 0.59 | 42.0 | 3.15e-01 | 79.5% | 38.9% |
| 3504555 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 45.0 | 3.76e-01 | 92.3% | 76.2% |
| 4028215 | 109.4.1.2417 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Importin_rep_6, TPR_IPO5 | 0.59 | 45.0 | 2.55e-01 | 94.9% | 64.4% |
| 3392170 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.58 | 39.0 | 3.88e-01 | 82.1% | 65.0% |
| 3634792 | 376.1.3.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-PHD-like | 0.58 | 42.0 | 3.47e-01 | 84.6% | 88.2% |
| 3255986 | 387.1.3.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like | 0.58 | 42.0 | 4.43e-01 | 79.5% | 94.3% |
| 2762489 | 377.2.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › Neil1-DNA_bind | 0.58 | 43.0 | 4.13e-01 | 94.9% | 68.9% |
| 3058078 | 3756.1.1.1 ↗ | a+b complex topology › Diiron beta-hydroxylase CmlA N-terminal domain › Diiron beta-hydroxylase CmlA N-terminal domain › Diiron beta-hydroxylase CmlA N-terminal domain › CmlA_N | 0.58 | 44.0 | 2.74e-01 | 87.2% | 20.9% |
| 3268082 | 387.1.3.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like | 0.57 | 42.0 | 4.43e-01 | 84.6% | 91.4% |
| 3696238 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.57 | 41.0 | 2.25e-01 | 79.5% | 10.0% |
| 3921340 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 39.0 | 2.92e-01 | 76.9% | 53.9% |
| 3585783 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.55 | 38.0 | 2.87e-01 | 76.9% | 53.9% |
| 3503978 | 387.1.7.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold | 0.55 | 35.0 | 3.73e-01 | 82.1% | 85.2% |
| None | — | 0.55 | 43.0 | 2.90e-01 | 100.0% | 22.6% | |
| 3462668 | 389.7.1.0 ↗ | few secondary structure elements › EGF-like › EGF-like domain in S-receptor kinase SRK9 › EGF-like domain in S-receptor kinase SRK9 | 0.55 | 37.0 | 3.43e-01 | 87.2% | 49.1% |
| 3165734 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.55 | 42.0 | 3.40e-01 | 89.7% | 43.6% |
| 4961222 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.54 | 41.0 | 3.39e-01 | 92.3% | 63.5% |
| 4282238 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 41.0 | 2.29e-01 | 100.0% | 18.0% |
| 3770545 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 38.0 | 2.65e-01 | 76.9% | 42.0% |
| 5068179 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.54 | 42.0 | 3.37e-01 | 97.4% | 41.1% |
| 3620900 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 43.0 | 2.58e-01 | 94.9% | 30.9% |
| 3768717 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.53 | 37.0 | 2.81e-01 | 74.4% | 39.1% |
| 3865776 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.52 | 37.0 | 2.82e-01 | 76.9% | 60.0% |
| 3937499 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.52 | 40.0 | 2.75e-01 | 84.6% | 46.7% |
| 3486264 | 4138.1.1.0 ↗ | few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat | 0.52 | 42.0 | 4.00e-01 | 94.9% | 85.7% |
| 3575555 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.52 | 36.0 | 2.79e-01 | 76.9% | 56.4% |
| 4951522 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.52 | 37.0 | 2.27e-01 | 79.5% | 13.0% |
| 3889949 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.51 | 35.0 | 2.17e-01 | 76.9% | 20.3% |
| 3924924 | 387.1.7.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold | 0.51 | 35.0 | 3.67e-01 | 89.7% | 85.7% |
| 4932434 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.51 | 44.0 | 3.65e-01 | 100.0% | 74.3% |
| 3729502 | 4138.1.1.0 ↗ | few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat | 0.50 | 38.0 | 3.96e-01 | 92.3% | 100.0% |
| 5079091 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.50 | 38.0 | 3.50e-01 | 89.7% | 61.8% |
| 4600077 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.50 | 34.0 | 2.90e-01 | 76.9% | 80.0% |
| 3474795 | 223.2.1.34 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 | 0.50 | 38.0 | 2.62e-01 | 92.3% | 50.5% |