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MK448964.1__QBX29564.1__Javan502_0042__00011

Bact-Vir

MK448964.1__QBX29564.1__Javan502_0042__00011

Identity

Accession:
MK448964 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-106
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 59.1 6.20e-16 98.3% 29.9%
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.89e-01 86.4% 70.2%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 4.77e-01 88.1% 65.6%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.00e-01 88.1% 42.1%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 4.56e-01 88.1% 70.7%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 3.87e-01 88.1% 41.8%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.60e-01 89.8% 70.2%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.26e-01 84.7% 63.4%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.32e-01 86.4% 67.8%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.63 44.0 3.38e-01 76.3% 73.6%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 3.71e-01 88.1% 41.1%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.10e-01 86.4% 57.4%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.14e-01 84.7% 62.2%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.33e-01 88.1% 73.8%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 42.0 3.61e-01 81.4% 43.7%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.69e-01 86.4% 50.6%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 42.0 3.76e-01 81.4% 51.7%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.59 40.0 4.03e-01 76.3% 70.7%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.01e-01 86.4% 69.9%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.59 46.0 2.73e-01 88.1% 29.4%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.48e-01 74.6% 51.5%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 3.75e-01 83.1% 58.6%
3euoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 42.0 3.20e-01 79.7% 77.1%
3ephA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 43.0 4.49e-01 94.9% 88.9%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 40.0 3.32e-01 83.1% 39.6%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.89e-01 86.4% 70.0%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.57 39.0 3.78e-01 79.7% 62.0%
1x9mA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.10e-01 83.1% 75.3%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.83e-01 88.1% 61.5%
1r1tA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.78e-01 88.1% 60.2%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.67e-01 86.4% 58.6%
2ckwA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 43.0 3.54e-01 88.1% 83.6%
1xu6A00 4.10.110.20 Few Secondary Structures › Irregular › Spasmolytic Protein; domain 1 › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain 0.55 36.0 3.36e-01 83.1% 50.0%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.91e-01 91.5% 65.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 32.0 2.62e-01 96.6% 30.2%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.65e-01 89.8% 61.4%
3fv6A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 39.0 2.96e-01 76.3% 91.0%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 36.0 2.87e-01 81.4% 31.3%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.57e-01 86.4% 60.6%
6jb7A01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 39.0 2.99e-01 81.4% 73.2%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.55e-01 86.4% 64.4%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 39.0 3.32e-01 81.4% 50.0%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 42.0 2.89e-01 91.5% 63.5%
5i2cB01 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.52 36.0 2.88e-01 84.7% 31.5%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 35.0 3.40e-01 76.3% 61.8%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 42.0 2.76e-01 100.0% 53.7%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.51 39.0 3.03e-01 89.8% 82.1%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 41.0 3.48e-01 94.9% 63.6%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.50 38.0 3.54e-01 81.4% 91.9%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.50 38.0 3.06e-01 83.1% 93.3%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 40.0 3.50e-01 89.8% 57.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949735 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.69 56.0 4.94e-01 88.1% 69.4%
3400082 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.69 56.0 4.65e-01 88.1% 59.0%
4966804 101.1.2.530 alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.68 51.0 4.60e-01 83.1% 69.4%
5077786 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.68 52.0 4.59e-01 83.1% 69.4%
5081465 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.67 54.0 4.55e-01 88.1% 59.0%
5039413 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 53.0 4.19e-01 88.1% 47.2%
4126575 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.67 54.0 4.02e-01 88.1% 40.7%
3482328 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.66 33.0 2.72e-01 81.4% 27.6%
5024398 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.66 52.0 4.01e-01 86.4% 50.8%
5009323 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 51.0 3.76e-01 84.7% 43.5%
5031078 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 51.0 4.36e-01 88.1% 64.0%
4959083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 48.0 3.58e-01 83.1% 35.3%
5030252 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 51.0 4.30e-01 88.1% 65.0%
4931502 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 4.18e-01 83.1% 66.7%
4983405 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 50.0 3.64e-01 86.4% 40.5%
5038826 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.04e-01 79.7% 65.6%
4939406 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 3.51e-01 86.4% 33.7%
3948373 304.8.1.69 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › YejG 0.62 42.0 3.48e-01 79.7% 38.5%
4961452 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.61 47.0 3.72e-01 84.7% 64.8%
5007348 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.54e-01 86.4% 39.3%
3599479 3910.1.1.1 extended segments › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › PMC2NT 0.61 50.0 4.28e-01 94.9% 63.0%
4954890 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.60 47.0 4.35e-01 88.1% 67.5%
5729 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 34.0 3.49e-01 72.9% 56.4%
3285369 109.4.1.2998 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25872 0.59 43.0 2.63e-01 83.1% 13.5%
4959972 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.99e-01 88.1% 63.2%
3284140 101.1.2.87 alpha arrays › HTH › HTH › winged helix domain › PaaX 0.58 45.0 3.96e-01 88.1% 64.2%
4636695 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.58 39.0 3.73e-01 83.1% 60.3%
3724558 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.57 31.0 2.74e-01 96.6% 35.3%
4959047 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 4.17e-01 88.1% 80.0%
5035783 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.56 40.0 3.66e-01 89.8% 56.2%
3698115 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.56 37.0 2.76e-01 78.0% 24.1%
3838156 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.56 45.0 3.73e-01 91.5% 77.3%
3579472 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 31.0 2.41e-01 98.3% 24.6%
5024801 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.49e-01 86.4% 50.4%
3929748 109.4.1.1303 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N, HAT_PRP39_C 0.55 39.0 2.41e-01 76.3% 15.3%
4937548 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.54 35.0 3.59e-01 81.4% 70.9%
138578 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 41.0 3.61e-01 88.1% 60.4%
3648955 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.53 44.0 2.78e-01 94.9% 57.6%
5038557 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.53 41.0 3.55e-01 88.1% 59.0%
4947228 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.49e-01 86.4% 67.0%
3911302 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 35.0 3.40e-01 88.1% 63.1%
4794894 2007.1.19.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT 0.52 36.0 3.56e-01 76.3% 70.1%
3550136 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 35.0 2.84e-01 72.9% 62.6%
3524888 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.51 35.0 3.45e-01 83.1% 64.3%
5049437 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 40.0 2.82e-01 93.2% 42.7%
3485296 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 34.0 2.84e-01 71.2% 89.5%
5035005 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.51 36.0 3.15e-01 81.4% 45.2%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 3.07e-01 72.9% 50.0%
4177037 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.50 35.0 3.59e-01 72.9% 89.1%