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MK448970.1__QBX29857.1__Javan516_0011__00063
Bact-VirMK448970.1__QBX29857.1__Javan516_0011__00063
Identity
- Accession:
- MK448970 ↗
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-57
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00006__D16-54
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18454.8 best | Mtd_N | 35.4 | 1.10e-08 | 81.4% | 81.1% |
D2
high
residues 353-402
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cgxA00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.63 | 47.0 | 3.31e-01 | 82.0% | 32.3% |
| 3pm9A01 | 3.30.43.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | 0.58 | 39.0 | 3.34e-01 | 72.0% | 77.4% |
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.58 | 39.0 | 3.15e-01 | 70.0% | 44.3% |
| 2proC01 | 3.30.300.50 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.58 | 41.0 | 3.83e-01 | 78.0% | 82.1% |
| 4dovA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 43.0 | 3.15e-01 | 92.0% | 89.2% |
| 3hm6X01 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.51 | 40.0 | 2.40e-01 | 90.0% | 46.3% |
| 8a9nA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 3.01e-01 | 88.0% | 61.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3282090 | 2485.1.1.105 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF29430 | 0.53 | 32.0 | 2.51e-01 | 74.0% | 22.4% |
| 4019104 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.51 | 37.0 | 2.21e-01 | 90.0% | 53.5% |
D3
medium
residues 211-333
Domain cluster:
rep: MK448933.1__QBX27862.1__Javan420_0062__00062__D89-177