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MK448971.1__QBX29920.1__Javan52_0001__00069

Bact-Vir

MK448971.1__QBX29920.1__Javan52_0001__00069

Identity

Accession:
MK448971 ↗
Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-95
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bn8A00 3.30.730.20 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › Cell division activator CedA 0.78 56.0 5.58e-01 75.4% 74.6%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.74 49.0 3.97e-01 76.9% 36.7%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 48.0 4.10e-01 100.0% 43.3%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 57.0 5.60e-01 100.0% 82.9%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 49.0 4.24e-01 100.0% 48.6%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 54.0 5.26e-01 100.0% 81.7%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.65 52.0 4.73e-01 89.2% 95.5%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 46.0 3.73e-01 80.0% 91.5%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 37.0 3.08e-01 73.8% 34.2%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 45.0 3.50e-01 78.5% 37.1%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.30e-01 100.0% 60.6%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.61 51.0 4.16e-01 96.9% 49.6%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 38.0 3.35e-01 83.1% 42.6%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 49.0 4.71e-01 89.2% 84.2%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.61 47.0 3.67e-01 86.2% 97.3%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 47.0 3.41e-01 84.6% 72.9%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 49.0 4.67e-01 90.8% 81.0%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 41.0 3.33e-01 72.3% 82.1%
3e1tA02 3.30.9.100 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.60 43.0 3.24e-01 76.9% 55.4%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.26e-01 100.0% 64.4%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 42.0 3.62e-01 89.2% 46.2%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 42.0 3.37e-01 78.5% 36.6%
2j3tC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 43.0 3.38e-01 78.5% 37.6%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 40.0 3.43e-01 93.8% 43.5%
1u7zC00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.59 46.0 3.29e-01 89.2% 93.2%
1fgsA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 44.0 2.93e-01 90.8% 19.0%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 45.0 4.14e-01 100.0% 64.0%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 3.11e-01 75.4% 73.1%
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.57 40.0 3.67e-01 72.3% 76.7%
2wr7C01 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.57 47.0 3.28e-01 96.9% 86.2%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 41.0 2.64e-01 78.5% 78.6%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 46.0 3.26e-01 92.3% 26.7%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 38.0 2.79e-01 70.8% 69.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 35.0 3.63e-01 86.2% 67.2%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 45.0 3.13e-01 90.8% 26.9%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 44.0 3.32e-01 89.2% 79.5%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.55 41.0 3.69e-01 100.0% 54.5%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.55 43.0 3.59e-01 95.4% 46.7%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 44.0 3.03e-01 87.7% 39.7%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 43.0 3.04e-01 90.8% 26.1%
1nijA02 3.30.1220.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Yjia; Chain: A;domain 2 › CobW-like, C-terminal domain 0.54 38.0 3.19e-01 75.4% 90.5%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.53 45.0 3.62e-01 95.4% 52.3%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 38.0 2.98e-01 75.4% 71.6%
5eoxB03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.52e-01 93.8% 72.7%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 35.0 2.28e-01 70.8% 19.4%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 45.0 2.79e-01 98.5% 22.7%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.52 43.0 2.96e-01 98.5% 41.9%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.22e-01 93.8% 97.6%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.12e-01 80.0% 45.4%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.50 36.0 3.47e-01 75.4% 71.6%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3331331 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.91 62.0 5.25e-01 70.8% 47.0%
3334492 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.87 60.0 5.59e-01 72.3% 58.7%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.78 51.0 5.85e-01 86.2% 95.6%
193881 252.2.1.4 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › CedA 0.78 56.0 5.58e-01 75.4% 74.6%
3882038 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.78 51.0 3.81e-01 80.0% 28.4%
3221077 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 58.0 5.45e-01 100.0% 71.2%
4948526 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.71 53.0 3.32e-01 81.5% 46.3%
3253472 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.70 54.0 4.93e-01 100.0% 63.5%
3209385 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 52.0 5.25e-01 100.0% 83.1%
3299580 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 51.0 5.18e-01 100.0% 81.5%
3333293 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 51.0 4.87e-01 100.0% 69.3%
3678841 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.68 52.0 4.76e-01 100.0% 63.5%
3815823 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 54.0 4.89e-01 100.0% 64.4%
3305941 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 52.0 4.31e-01 100.0% 46.7%
3319893 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 50.0 4.41e-01 100.0% 54.0%
3436776 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 50.0 4.40e-01 100.0% 55.0%
3333919 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 52.0 4.80e-01 100.0% 68.2%
3471938 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.64 44.0 3.34e-01 89.2% 29.4%
3317750 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 51.0 3.97e-01 89.2% 95.3%
3426692 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 51.0 4.92e-01 100.0% 77.3%
3653274 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 50.0 4.65e-01 100.0% 67.1%
3299579 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 51.0 5.03e-01 98.5% 82.9%
3460642 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.63 45.0 3.49e-01 78.5% 34.3%
3782077 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.63 47.0 3.52e-01 78.5% 35.5%
3327575 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 51.0 4.49e-01 100.0% 59.0%
3669022 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 50.0 4.49e-01 100.0% 62.1%
3348638 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 50.0 4.20e-01 100.0% 51.3%
3709800 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 46.0 4.11e-01 98.5% 55.8%
None 0.61 41.0 3.15e-01 87.7% 29.7%
3231733 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.60 44.0 3.42e-01 78.5% 35.7%
3735541 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.60 41.0 3.00e-01 83.1% 25.6%
3660311 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 49.0 4.61e-01 98.5% 75.0%
3451695 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 52.0 4.71e-01 98.5% 71.1%
3227023 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 3.28e-01 96.9% 28.6%
4192693 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 44.0 4.04e-01 95.4% 61.2%
3600795 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 43.0 3.32e-01 78.5% 35.9%
1937542 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.58 49.0 4.01e-01 98.5% 49.2%
4542899 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 44.0 3.34e-01 83.1% 81.8%
3481288 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 51.0 4.27e-01 100.0% 58.3%
3166231 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.58 46.0 3.37e-01 89.2% 97.9%
4324652 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.58 41.0 2.89e-01 86.2% 22.2%
3750640 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.58 41.0 3.48e-01 95.4% 44.5%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.57 40.0 3.43e-01 95.4% 43.6%
4944239 301.13.1.0 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.57 49.0 3.91e-01 95.4% 52.3%
4040094 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.57 46.0 3.28e-01 90.8% 27.9%
3167378 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.57 46.0 3.38e-01 90.8% 39.7%
4251813 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.57 45.0 3.24e-01 89.2% 29.5%
3388095 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.57 45.0 3.30e-01 89.2% 56.6%
4489808 506.2.1.2 beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain › UvrB_inter 0.56 39.0 3.66e-01 75.4% 77.6%
4944904 301.13.1.0 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.55 48.0 3.82e-01 100.0% 51.9%
3653181 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.55 45.0 3.52e-01 92.3% 42.8%
4251276 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 47.0 3.23e-01 100.0% 34.5%
3931122 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.38e-01 95.4% 50.5%
3945385 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.54 38.0 2.87e-01 75.4% 71.1%
3890418 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.54 38.0 3.29e-01 95.4% 45.7%
4032084 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.54 39.0 3.52e-01 92.3% 53.7%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 34.0 3.26e-01 72.3% 54.7%
3495619 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.54 37.0 3.22e-01 96.9% 43.6%
5024590 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 43.0 2.81e-01 93.8% 97.6%
2162577 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.53 46.0 3.62e-01 96.9% 50.0%
5072003 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 43.0 2.84e-01 95.4% 95.8%
5024399 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 44.0 2.83e-01 98.5% 75.4%
5039029 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 38.0 3.47e-01 92.3% 55.6%
5025231 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.53 42.0 3.09e-01 92.3% 38.1%
3588665 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 35.0 2.95e-01 72.3% 99.2%
4126985 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.51 40.0 3.31e-01 87.7% 52.4%