←Back to structures

MK448972.1__QBX30044.1__Javan520_0056__00002

Bact-Vir

MK448972.1__QBX30044.1__Javan520_0056__00002

Identity

Accession:
MK448972 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan520

TaxID: 2548233

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-170
PDB
Domain cluster: rep: MK448585.1__QBX12008.1__JavanS625_0002__00014__D2-144
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08797.17 best HIRAN 48.3 1.00e-12 76.8% 71.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 23.0 3.20e-01 87.5% 63.5%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 25.0 2.54e-01 86.9% 35.1%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 25.0 2.50e-01 86.9% 33.5%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 25.0 2.52e-01 87.5% 34.1%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 29.0 3.55e-01 88.7% 72.5%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 27.0 3.47e-01 88.7% 73.2%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 28.0 3.41e-01 88.7% 71.4%
2pzhA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 26.0 2.94e-01 86.3% 57.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3697243 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.83 48.0 5.50e-01 89.9% 74.6%
2069093 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.83 48.0 5.56e-01 89.9% 77.0%
3334834 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.77 46.0 5.83e-01 88.7% 97.1%
3195416 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.68 47.0 4.96e-01 89.9% 78.7%
4012275 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.67 42.0 4.51e-01 89.9% 71.7%
4952916 109.4.1.3613 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIRAN 0.67 41.0 3.30e-01 86.9% 34.2%
3253248 3468.1.1.0 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.60 42.0 4.69e-01 89.9% 92.3%
3667518 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.59 28.0 3.36e-01 88.7% 66.7%
3654114 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.56 30.0 2.84e-01 84.5% 41.4%
4011665 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.55 25.0 2.80e-01 87.5% 49.6%
3929905 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.55 25.0 2.97e-01 89.9% 60.8%
3740450 328.1.1.3 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.52 21.0 2.85e-01 86.9% 68.9%
3793768 328.1.1.3 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.52 24.0 2.83e-01 88.7% 60.0%
2658868 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.52 28.0 3.07e-01 78.6% 61.9%
3250735 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.51 24.0 2.73e-01 89.3% 57.6%
3702180 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.51 24.0 2.65e-01 89.3% 53.3%