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MK448980.1__QBX30454.1__Javan536_0020__00020

Bact-Vir

MK448980.1__QBX30454.1__Javan536_0020__00020

Identity

Accession:
MK448980 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-89
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07374.18 best DUF1492 116.4 8.00e-34 100.0% 80.0%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 56.0 6.13e-01 71.2% 86.2%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 51.0 5.38e-01 71.2% 76.4%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.74 55.0 4.50e-01 80.0% 43.7%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.74 50.0 4.14e-01 70.0% 39.4%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 5.75e-01 75.0% 90.6%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 5.75e-01 75.0% 95.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 51.0 5.16e-01 78.8% 73.8%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 48.0 4.58e-01 70.0% 61.7%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.59e-01 86.3% 86.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 4.81e-01 92.5% 77.1%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 4.88e-01 93.8% 72.5%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.39e-01 80.0% 78.2%
3m8jA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 45.0 4.39e-01 70.0% 65.6%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 57.0 4.23e-01 97.5% 86.4%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.50e-01 93.8% 78.8%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.58e-01 77.5% 70.1%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.64 52.0 4.44e-01 88.7% 74.8%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.37e-01 100.0% 72.8%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.08e-01 90.0% 78.2%
3fm5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 4.53e-01 97.5% 75.4%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.91e-01 85.0% 78.8%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.88e-01 90.0% 63.6%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 3.73e-01 88.7% 58.5%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.69e-01 85.0% 78.7%
3gn4A00 6.10.220.10 Special › Helix non-globular › Helical scaffold and wing domains of SecA › 0.53 47.0 3.90e-01 98.8% 58.1%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4175748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 62.0 6.24e-01 76.2% 75.0%
3291186 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 60.0 5.42e-01 72.5% 56.2%
4530655 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 58.0 5.39e-01 73.8% 58.0%
3587538 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.82 56.0 6.06e-01 72.5% 83.8%
4876274 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.81 59.0 6.54e-01 76.2% 96.8%
3163613 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 57.0 6.11e-01 73.8% 88.6%
3977260 101.1.1.39 alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ 0.80 57.0 5.00e-01 75.0% 51.7%
4683276 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.80 66.0 6.25e-01 88.7% 76.8%
4148347 101.1.1.26 alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.80 54.0 4.94e-01 70.0% 53.8%
4454772 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 58.0 6.33e-01 78.8% 95.4%
4303963 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 55.0 5.73e-01 72.5% 77.3%
4237551 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 56.0 5.33e-01 76.2% 63.2%
3286778 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 56.0 5.95e-01 73.8% 88.6%
3959876 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 59.0 5.43e-01 78.8% 64.0%
4146353 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.78 61.0 6.10e-01 83.7% 82.5%
3283863 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 61.0 5.90e-01 85.0% 74.4%
3955987 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.78 55.0 5.16e-01 72.5% 61.1%
4497189 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.78 55.0 5.99e-01 72.5% 90.8%
4202221 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 56.0 5.99e-01 76.2% 88.2%
None 0.77 52.0 4.95e-01 70.0% 58.9%
3284051 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 56.0 6.06e-01 77.5% 93.8%
3959929 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.77 56.0 5.61e-01 77.5% 76.2%
3961841 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.76 59.0 6.29e-01 90.0% 95.7%
3282225 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 58.0 5.82e-01 82.5% 81.2%
3627888 101.1.1.64 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.76 55.0 4.67e-01 75.0% 73.6%
4486973 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.76 54.0 5.32e-01 76.2% 69.4%
3163616 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 57.0 5.37e-01 78.8% 67.0%
3964397 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 56.0 5.07e-01 78.8% 59.0%
3972638 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 53.0 5.75e-01 75.0% 89.2%
4336182 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 55.0 5.29e-01 77.5% 72.2%
4577850 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.75 60.0 5.60e-01 87.5% 71.7%
4289285 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 53.0 5.15e-01 76.2% 66.7%
4456068 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 57.0 5.33e-01 83.7% 66.0%
3738852 101.1.1.64 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.74 54.0 4.56e-01 75.0% 71.2%
3587471 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 61.0 5.21e-01 87.5% 66.7%
4439853 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 52.0 5.49e-01 72.5% 84.3%
2464007 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 51.0 5.61e-01 72.5% 87.9%
3974736 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.70e-01 87.5% 80.0%
4205790 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 52.0 5.24e-01 75.0% 73.8%
3959868 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 51.0 5.29e-01 72.5% 78.7%
3951829 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 58.0 5.71e-01 90.0% 81.2%
3291331 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 54.0 5.50e-01 82.5% 80.0%
3961604 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 59.0 5.50e-01 91.3% 71.0%
3972713 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 56.0 5.31e-01 83.7% 69.5%
3971149 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.73 54.0 5.49e-01 81.2% 80.0%
3288971 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.72 65.0 5.27e-01 100.0% 58.7%
3971665 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 5.73e-01 83.7% 88.0%
2817645 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.72 52.0 5.25e-01 75.0% 76.2%
4233279 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.72 63.0 4.54e-01 100.0% 36.7%
3283374 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.72 52.0 4.93e-01 76.2% 65.3%
4034281 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 55.0 5.00e-01 85.0% 60.9%
3284461 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 63.0 4.48e-01 100.0% 35.2%
3971395 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 58.0 5.96e-01 88.7% 93.3%
4663875 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.71 63.0 4.51e-01 100.0% 35.0%
2813289 101.1.1.71 alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.71 48.0 4.55e-01 70.0% 59.8%
3284984 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.71 64.0 4.47e-01 100.0% 33.1%
4388780 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.71 61.0 5.09e-01 97.5% 59.3%
4372550 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 53.0 5.13e-01 78.8% 70.0%
1810916 101.1.1.71 alpha arrays › HTH › HTH › Three-helical HTH › KORA 0.71 48.0 5.21e-01 70.0% 89.2%
4032673 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 63.0 4.47e-01 100.0% 34.3%
4043241 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 54.0 5.45e-01 82.5% 82.5%
3969325 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 51.0 5.37e-01 75.0% 87.1%
3288090 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.71 52.0 5.52e-01 81.2% 88.6%
4279016 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.71 55.0 5.56e-01 83.7% 87.5%
None 0.70 63.0 4.43e-01 100.0% 34.3%
3284469 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 53.0 5.51e-01 80.0% 89.3%
3284011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 51.0 5.40e-01 76.2% 88.6%
3973360 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.70 52.0 5.43e-01 81.2% 91.4%
4024517 101.1.1.64 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_2 0.70 54.0 4.73e-01 81.2% 91.3%
4238054 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.70 62.0 4.40e-01 100.0% 35.1%
3573627 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 52.0 4.50e-01 80.0% 52.0%
3967748 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.69 52.0 5.19e-01 83.7% 77.6%
3967026 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.68 53.0 5.45e-01 87.5% 90.7%
3590541 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.68 59.0 4.57e-01 97.5% 45.6%
3998881 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 46.0 4.60e-01 72.5% 75.0%
3587755 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.64 58.0 4.91e-01 100.0% 73.8%
3279339 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.64 56.0 4.32e-01 100.0% 46.5%