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MK448982.1__QBX30544.1__Javan554_0017__00036

Bact-Vir

MK448982.1__QBX30544.1__Javan554_0017__00036

Identity

Accession:
MK448982 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan554

TaxID: 2548256

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-80_103-113
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.61 42.0 4.23e-01 91.9% 72.1%
2uxwA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 44.0 3.80e-01 77.9% 63.1%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.58 51.0 4.36e-01 100.0% 73.8%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.58 34.0 3.48e-01 72.1% 58.6%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 41.0 3.69e-01 81.4% 53.0%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.57 38.0 3.68e-01 82.6% 59.8%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.56 42.0 3.76e-01 82.6% 81.4%
2g38B00 1.20.1260.20 Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily 0.53 41.0 3.28e-01 82.6% 84.4%
1hy0A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.53 43.0 3.74e-01 90.7% 78.8%
1yt3A02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.52 38.0 3.70e-01 96.5% 68.7%
6ig5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 43.0 3.70e-01 90.7% 81.9%
3ctwB00 1.10.8.930 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 0.52 37.0 3.36e-01 75.6% 72.5%
1q59A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.52 38.0 3.07e-01 77.9% 64.0%
4at7A01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.52 38.0 3.06e-01 89.5% 37.4%
2b5dX02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.51 43.0 3.88e-01 90.7% 78.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989723 632.2.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › FIVAR 0.60 40.0 4.53e-01 79.1% 90.8%
4956714 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.59 43.0 4.21e-01 77.9% 69.5%
3352797 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.55 41.0 2.97e-01 77.9% 44.7%
3702612 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.54 44.0 3.24e-01 91.9% 87.8%
4414831 633.13.1.1 ↗ alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB 0.53 39.0 3.22e-01 76.7% 82.9%
3827313 633.4.1.0 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.53 41.0 3.77e-01 82.6% 64.5%
5014511 5053.1.1.1 ↗ alpha complex topology › Clc chloride channel › Clc chloride channel › Clc chloride channel › Voltage_CLC 0.52 38.0 2.45e-01 77.9% 20.0%