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MK448983.1__QBX30597.1__Javan558_0018__00026

Bact-Vir

MK448983.1__QBX30597.1__Javan558_0018__00026

Identity

Accession:
MK448983 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-57
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.76 68.0 5.13e-01 100.0% 47.9%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.75 63.0 5.02e-01 94.0% 49.0%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 65.0 5.32e-01 100.0% 60.6%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 62.0 5.05e-01 100.0% 59.4%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 63.0 5.04e-01 100.0% 61.2%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 56.0 5.94e-01 100.0% 97.7%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.71 63.0 5.39e-01 100.0% 73.4%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 57.0 3.52e-01 100.0% 14.9%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 62.0 4.13e-01 100.0% 46.2%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.71 56.0 4.88e-01 98.0% 57.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 4.56e-01 84.0% 58.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 4.83e-01 84.0% 65.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 4.73e-01 84.0% 60.9%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 57.0 4.66e-01 100.0% 54.6%
3fn2A00 3.30.2200.10 Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 0.66 53.0 4.24e-01 100.0% 45.4%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 56.0 4.96e-01 100.0% 65.8%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.64 55.0 5.03e-01 100.0% 73.1%
8owfA01 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 47.0 3.65e-01 100.0% 36.9%
3kewB02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.63 55.0 3.97e-01 100.0% 70.1%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 55.0 4.63e-01 100.0% 59.3%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 4.13e-01 100.0% 62.4%
3ndiA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 53.0 3.57e-01 100.0% 31.7%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 53.0 4.42e-01 100.0% 66.3%
4c2mA09 3.30.70.2850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 53.0 3.69e-01 100.0% 75.3%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.61 49.0 4.17e-01 100.0% 65.0%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 49.0 3.77e-01 100.0% 73.9%
4rv9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 3.50e-01 100.0% 31.8%
3beuA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 48.0 3.80e-01 100.0% 44.8%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 49.0 4.00e-01 100.0% 79.6%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.60 51.0 3.71e-01 100.0% 38.4%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.59 48.0 3.36e-01 100.0% 28.1%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 50.0 4.24e-01 100.0% 63.2%
2iteA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.51e-01 100.0% 37.2%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 4.05e-01 100.0% 63.0%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 47.0 3.66e-01 100.0% 52.8%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 48.0 3.97e-01 100.0% 55.2%
1v5vA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.56 46.0 3.32e-01 100.0% 34.1%
2b9kA00 2.20.20.70 Mainly Beta › Single Sheet › Anthopleurin-A › 0.56 41.0 4.15e-01 98.0% 91.5%
3kd4A03 2.60.120.1130 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.35e-01 100.0% 34.3%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.20e-01 82.0% 45.9%
2oikA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 44.0 3.34e-01 98.0% 47.5%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.53 43.0 4.12e-01 100.0% 75.4%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 42.0 4.12e-01 100.0% 86.0%
2bujB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 3.64e-01 100.0% 56.4%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 44.0 4.17e-01 100.0% 95.1%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 36.0 2.98e-01 94.0% 36.5%
4m9fA00 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 41.0 2.93e-01 100.0% 40.5%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 44.0 4.24e-01 100.0% 100.0%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.52 42.0 3.49e-01 100.0% 58.7%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 43.0 3.76e-01 100.0% 79.8%
2p5vA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.52 38.0 3.33e-01 100.0% 50.0%
4s2rQ03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.51 41.0 2.65e-01 100.0% 31.3%
1cl7I00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.45e-01 100.0% 57.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.92 80.0 6.10e-01 100.0% 44.8%
4032883 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.82 73.0 5.67e-01 100.0% 46.7%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.82 74.0 5.73e-01 100.0% 47.6%
4669352 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 63.0 4.84e-01 100.0% 39.1%
3416144 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.78 67.0 4.37e-01 100.0% 22.9%
3394788 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 68.0 4.36e-01 100.0% 27.1%
4092486 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.77 58.0 3.94e-01 100.0% 22.8%
2642578 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.77 69.0 5.28e-01 100.0% 46.4%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 65.0 5.34e-01 100.0% 52.2%
3393350 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 62.0 4.14e-01 100.0% 25.4%
4176978 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.71 63.0 4.03e-01 100.0% 29.6%
3216247 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.71 60.0 5.00e-01 100.0% 53.3%
3986531 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.71 58.0 4.26e-01 100.0% 33.6%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.71 61.0 5.06e-01 100.0% 58.7%
4648999 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.70 62.0 4.04e-01 100.0% 31.4%
4395103 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 58.0 4.83e-01 100.0% 52.2%
3968097 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.70 62.0 4.77e-01 100.0% 50.9%
4026988 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 61.0 3.84e-01 100.0% 26.5%
4149280 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.69 60.0 5.55e-01 100.0% 96.9%
4276265 6012.1.1.0 few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI 0.69 49.0 5.26e-01 92.0% 97.5%
3389168 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.69 59.0 3.94e-01 100.0% 24.4%
3946118 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 59.0 5.21e-01 100.0% 66.7%
3999592 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.67 47.0 3.42e-01 100.0% 26.4%
3178300 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.67 57.0 3.42e-01 100.0% 13.7%
4889074 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.67 54.0 4.29e-01 100.0% 43.2%
3288169 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 56.0 4.86e-01 100.0% 70.0%
5042402 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.65 56.0 5.37e-01 100.0% 90.0%
3922010 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 48.0 4.02e-01 100.0% 44.0%
3256508 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 53.0 4.56e-01 100.0% 57.6%
4587522 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 53.0 4.45e-01 100.0% 52.6%
4974179 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 55.0 4.31e-01 100.0% 60.0%
3617368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 44.0 3.81e-01 74.0% 80.0%
1871771 1.1.5.43 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.63 53.0 4.19e-01 100.0% 80.2%
4047545 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 53.0 3.81e-01 100.0% 38.7%
1492426 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.62 54.0 3.86e-01 100.0% 36.4%
4944566 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 50.0 4.02e-01 100.0% 74.8%
5022325 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.62 53.0 4.34e-01 100.0% 65.0%
3798169 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 48.0 3.12e-01 100.0% 18.0%
4995187 1.1.7.14 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.62 50.0 3.98e-01 100.0% 56.7%
5041728 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 53.0 4.74e-01 100.0% 70.0%
None 0.61 44.0 3.04e-01 100.0% 19.7%
3250648 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 50.0 4.16e-01 100.0% 60.0%
1096110 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.60 44.0 3.04e-01 100.0% 19.9%
3685451 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.60 51.0 3.76e-01 100.0% 67.6%
4008034 223.1.1.113 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.60 50.0 3.56e-01 100.0% 42.4%
3706839 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.59 50.0 4.10e-01 100.0% 76.0%
4282509 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 50.0 2.86e-01 100.0% 9.7%
1173463 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.59 50.0 4.35e-01 100.0% 71.6%
5067181 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.59 49.0 2.96e-01 100.0% 14.2%
2801086 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.58 49.0 3.00e-01 100.0% 15.3%
4958890 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.58 49.0 4.29e-01 100.0% 72.5%
4997729 9.24.1.2 beta barrels › Lipocalins/Streptavidin › hypothetical protein BACOVA_00364 › hypothetical protein BACOVA_00364 › Lipocalin_5 0.58 42.0 3.11e-01 80.0% 68.1%
4025731 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.57 47.0 3.28e-01 100.0% 27.3%
5015989 239.1.1.7 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.56 45.0 4.43e-01 100.0% 85.5%
4473668 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.56 46.0 3.29e-01 100.0% 28.8%
185983 6012.1.1.1 few secondary structure elements › Antimicrobial peptide LCI › Antimicrobial peptide LCI › Antimicrobial peptide LCI › lci 0.56 41.0 4.15e-01 98.0% 91.5%
3972495 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.14e-01 100.0% 60.0%
406956 392.1.1.1 beta meanders › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › Phage_Coat_A 0.54 44.0 4.13e-01 100.0% 74.2%
5073989 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 45.0 3.36e-01 100.0% 55.7%
4939371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.45e-01 100.0% 65.2%
3685389 223.2.1.23 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.53 44.0 3.08e-01 100.0% 42.2%
3251196 11.1.1.698 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.52 40.0 3.51e-01 100.0% 53.3%
2898325 271.1.1.2 beta barrels › GFP-like › GFP-like › GFP-like 0.51 39.0 2.54e-01 98.0% 20.1%