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MK448987.1__QBX30791.1__Javan576_0003__00065
Bact-VirMK448987.1__QBX30791.1__Javan576_0003__00065
Identity
- Accession:
- MK448987 ↗
- Kingdom:
- phage
Quality
94.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-59
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2istA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.81 | 73.0 | 6.79e-01 | 100.0% | 87.5% |
| 3dh3B01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.78 | 64.0 | 6.37e-01 | 89.7% | 88.3% |
| 5ldaB00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.77 | 58.0 | 5.92e-01 | 100.0% | 82.5% |
| 1kskA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.74 | 59.0 | 5.72e-01 | 87.9% | 78.8% |
| 1fm0D00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.72 | 65.0 | 5.81e-01 | 100.0% | 85.2% |
| 1ryjA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.70 | 59.0 | 5.58e-01 | 100.0% | 78.6% |
| 3cwiA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.69 | 61.0 | 5.79e-01 | 98.3% | 86.8% |
| 5mpoB00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.68 | 60.0 | 5.32e-01 | 100.0% | 86.9% |
| 1wwtA01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.68 | 58.0 | 5.70e-01 | 98.3% | 90.3% |
| 2q5wD00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.67 | 60.0 | 5.46e-01 | 100.0% | 85.7% |
| 3thdA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 58.0 | 4.34e-01 | 100.0% | 43.8% |
| 3oo2A01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.63 | 55.0 | 4.11e-01 | 100.0% | 56.7% |
| 2gbmA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 54.0 | 4.92e-01 | 100.0% | 90.1% |
| 3rpfC00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.62 | 54.0 | 5.09e-01 | 100.0% | 87.5% |
| 1euvB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 52.0 | 4.76e-01 | 100.0% | 81.0% |
| 1wghA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 52.0 | 4.69e-01 | 100.0% | 90.4% |
| 4dzdA01 | 3.30.70.1200 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 | 0.61 | 46.0 | 4.32e-01 | 100.0% | 67.1% |
| 2lxaA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 51.0 | 4.58e-01 | 100.0% | 78.2% |
| 2q1mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 52.0 | 4.16e-01 | 100.0% | 58.6% |
| 1rhfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 3.60e-01 | 100.0% | 47.3% |
| 2jbmD01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.58 | 45.0 | 3.42e-01 | 100.0% | 34.5% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 41.0 | 3.67e-01 | 100.0% | 51.7% |
| 4l3aA03 | 2.60.40.3890 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 48.0 | 4.02e-01 | 100.0% | 83.9% |
| 2futA03 | 2.60.40.2750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 50.0 | 4.25e-01 | 100.0% | 60.4% |
| 2dyoA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 48.0 | 4.32e-01 | 100.0% | 86.9% |
| 5ejrA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 46.0 | 4.14e-01 | 98.3% | 94.2% |
| 4g6iB01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 46.0 | 4.12e-01 | 100.0% | 89.9% |
| 1r21A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 47.0 | 3.94e-01 | 96.6% | 84.0% |
| 7wrgA02 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 46.0 | 3.55e-01 | 94.8% | 68.9% |
| 3fm8A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 47.0 | 3.91e-01 | 94.8% | 87.8% |
| 4qawH03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 45.0 | 3.60e-01 | 100.0% | 53.0% |
| 3bwsA01 | 2.60.40.3070 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 42.0 | 3.77e-01 | 86.2% | 65.5% |
| 2ns0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 46.0 | 4.13e-01 | 100.0% | 67.9% |
| 5yycA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.54 | 45.0 | 3.55e-01 | 100.0% | 65.2% |
| 3tqvA01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.54 | 42.0 | 3.32e-01 | 100.0% | 37.6% |
| 5l56A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 46.0 | 4.09e-01 | 98.3% | 81.0% |
| 2vecA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 45.0 | 3.85e-01 | 100.0% | 67.0% |
| 2g1lA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 46.0 | 3.83e-01 | 96.6% | 86.4% |
| 2cswA01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 46.0 | 3.61e-01 | 96.6% | 70.6% |
| 2ychA02 | 3.30.1490.300 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 44.0 | 4.42e-01 | 100.0% | 93.3% |
| 2f8mA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 41.0 | 3.80e-01 | 100.0% | 64.6% |
| 3cmgA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 4.00e-01 | 100.0% | 73.6% |
| 7m0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 43.0 | 3.99e-01 | 100.0% | 82.1% |
| 2i14A01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.51 | 40.0 | 3.40e-01 | 100.0% | 50.0% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 3.67e-01 | 100.0% | 61.4% |
| 2ja9A02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 37.0 | 3.42e-01 | 84.5% | 84.5% |
| 3gnnA01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.51 | 38.0 | 3.03e-01 | 100.0% | 37.0% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.19e-01 | 100.0% | 45.4% |
| 2v9kA03 | 3.30.70.2510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.41e-01 | 100.0% | 54.4% |
ECOD (86)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4078200 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 1.00 | 82.0 | 8.82e-01 | 84.5% | 98.0% |
| 4031038 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.95 | 88.0 | 8.70e-01 | 100.0% | 95.0% |
| 5046577 | 221.1.2.21 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › ThiS | 0.90 | 71.0 | 7.31e-01 | 100.0% | 89.1% |
| 4140253 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.87 | 80.0 | 7.70e-01 | 100.0% | 93.8% |
| 5016213 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.87 | 79.0 | 7.60e-01 | 100.0% | 93.8% |
| 4979288 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.87 | 69.0 | 6.47e-01 | 100.0% | 71.4% |
| 3588222 | 221.1.2.18 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › PF29908 | 0.86 | 78.0 | 7.56e-01 | 100.0% | 93.8% |
| 5064972 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.85 | 71.0 | 6.45e-01 | 100.0% | 69.3% |
| 5049011 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.85 | 68.0 | 6.75e-01 | 100.0% | 83.3% |
| 3587989 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.84 | 76.0 | 7.34e-01 | 100.0% | 92.3% |
| 4600619 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.84 | 76.0 | 7.34e-01 | 100.0% | 90.8% |
| 4148940 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.82 | 74.0 | 6.97e-01 | 100.0% | 88.6% |
| 3964567 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.82 | 74.0 | 6.79e-01 | 100.0% | 82.7% |
| 4246558 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.82 | 75.0 | 6.82e-01 | 100.0% | 85.3% |
| 5073305 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.81 | 59.0 | 6.31e-01 | 91.4% | 90.0% |
| 4275739 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.81 | 72.0 | 6.73e-01 | 98.3% | 85.7% |
| 3291005 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.81 | 72.0 | 6.79e-01 | 100.0% | 87.1% |
| 4031912 | 221.1.2.18 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › PF29908 | 0.80 | 72.0 | 7.11e-01 | 98.3% | 98.3% |
| 3785267 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.80 | 71.0 | 6.53e-01 | 100.0% | 82.7% |
| 3945814 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.79 | 65.0 | 6.22e-01 | 87.9% | 78.5% |
| 3954326 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.79 | 70.0 | 6.63e-01 | 100.0% | 87.1% |
| 3949525 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.79 | 67.0 | 6.67e-01 | 94.8% | 96.7% |
| 3982809 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.79 | 70.0 | 6.41e-01 | 100.0% | 82.7% |
| 4983771 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.79 | 67.0 | 6.67e-01 | 98.3% | 91.7% |
| 3958103 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.77 | 59.0 | 5.73e-01 | 100.0% | 73.8% |
| 4589076 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.77 | 63.0 | 5.73e-01 | 87.9% | 68.0% |
| 3283613 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.77 | 67.0 | 6.37e-01 | 100.0% | 88.6% |
| 3678044 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.77 | 67.0 | 5.74e-01 | 100.0% | 65.3% |
| 4134995 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.76 | 66.0 | 6.14e-01 | 100.0% | 82.7% |
| 5069867 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.76 | 65.0 | 6.47e-01 | 100.0% | 90.0% |
| 3261909 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.76 | 66.0 | 5.86e-01 | 100.0% | 72.9% |
| 5015692 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.76 | 68.0 | 6.08e-01 | 100.0% | 91.3% |
| 5037436 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.76 | 64.0 | 6.41e-01 | 100.0% | 90.0% |
| 1118566 | 221.1.2.5 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 | 0.75 | 60.0 | 5.80e-01 | 87.9% | 81.5% |
| 3385465 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.75 | 62.0 | 6.20e-01 | 98.3% | 91.7% |
| 3584824 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.74 | 63.0 | 6.30e-01 | 100.0% | 91.7% |
| 4988309 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.74 | 60.0 | 6.03e-01 | 100.0% | 88.3% |
| 3838530 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.73 | 61.0 | 6.10e-01 | 100.0% | 93.3% |
| 4100709 | 221.1.1.21 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH | 0.73 | 67.0 | 5.60e-01 | 100.0% | 69.5% |
| 5010227 | 221.1.1.75 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 | 0.73 | 63.0 | 6.05e-01 | 100.0% | 84.6% |
| 4510393 | 221.1.1.21 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH | 0.73 | 67.0 | 6.24e-01 | 100.0% | 85.7% |
| 4157644 | 221.1.1.21 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH | 0.73 | 66.0 | 5.67e-01 | 100.0% | 73.3% |
| 4089044 | 221.1.1.21 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH | 0.73 | 66.0 | 6.03e-01 | 100.0% | 85.3% |
| 4938318 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.72 | 64.0 | 6.20e-01 | 100.0% | 87.7% |
| 4981964 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.72 | 60.0 | 5.78e-01 | 100.0% | 81.5% |
| 4574961 | 221.1.1.21 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH | 0.72 | 65.0 | 5.71e-01 | 100.0% | 77.6% |
| 3952316 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.72 | 65.0 | 5.81e-01 | 100.0% | 85.0% |
| 6202 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.72 | 65.0 | 5.81e-01 | 100.0% | 85.2% |
| 3821272 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.72 | 65.0 | 5.97e-01 | 100.0% | 90.7% |
| 5024466 | 221.1.1.75 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 | 0.72 | 59.0 | 5.91e-01 | 100.0% | 90.0% |
| 5063323 | 221.1.1.75 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 | 0.72 | 61.0 | 5.91e-01 | 100.0% | 84.6% |
| 5061241 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.70 | 60.0 | 5.82e-01 | 100.0% | 86.2% |
| 6207 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.70 | 59.0 | 5.58e-01 | 100.0% | 78.6% |
| 5038785 | 221.1.1.75 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 | 0.69 | 58.0 | 5.65e-01 | 100.0% | 86.2% |
| 5016705 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.68 | 55.0 | 5.51e-01 | 100.0% | 88.3% |
| 3387821 | 221.1.1.86 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS-like | 0.68 | 53.0 | 5.45e-01 | 98.3% | 90.9% |
| 4074877 | 221.1.1.109 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Sde2_N_Ubi_vert | 0.67 | 59.0 | 5.58e-01 | 100.0% | 87.1% |
| 167028 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.67 | 60.0 | 5.46e-01 | 100.0% | 85.7% |
| 4441863 | 221.1.1.109 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Sde2_N_Ubi_vert | 0.67 | 57.0 | 5.46e-01 | 100.0% | 82.9% |
| 5033157 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.66 | 58.0 | 5.38e-01 | 100.0% | 90.7% |
| 3845104 | 221.1.1.109 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Sde2_N_Ubi_vert | 0.66 | 58.0 | 5.47e-01 | 100.0% | 87.1% |
| 3744522 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.65 | 56.0 | 4.99e-01 | 100.0% | 77.6% |
| 3265525 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.63 | 55.0 | 4.99e-01 | 100.0% | 88.7% |
| 4991872 | 221.1.1.14 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS | 0.62 | 55.0 | 5.06e-01 | 100.0% | 93.3% |
| 3695530 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.62 | 53.0 | 4.86e-01 | 100.0% | 83.7% |
| 4023055 | 12.6.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M | 0.61 | 54.0 | 4.46e-01 | 100.0% | 61.0% |
| 3260279 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.61 | 51.0 | 4.80e-01 | 100.0% | 93.3% |
| 3815996 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.61 | 51.0 | 4.31e-01 | 100.0% | 64.8% |
| 4027298 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.60 | 50.0 | 4.29e-01 | 100.0% | 84.0% |
| 4026446 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 51.0 | 4.41e-01 | 100.0% | 68.4% |
| 3264090 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 48.0 | 4.01e-01 | 100.0% | 57.4% |
| 5051200 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 48.0 | 4.44e-01 | 100.0% | 88.7% |
| 3373335 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.58 | 49.0 | 4.57e-01 | 100.0% | 89.3% |
| 4026242 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 49.0 | 4.55e-01 | 100.0% | 90.7% |
| 4547656 | 221.1.1.88 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N | 0.57 | 48.0 | 4.40e-01 | 100.0% | 87.5% |
| 3805031 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.56 | 47.0 | 4.14e-01 | 100.0% | 70.5% |
| 3421200 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 47.0 | 4.38e-01 | 100.0% | 88.0% |
| 3724442 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 39.0 | 3.73e-01 | 100.0% | 62.9% |
| 4933784 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.54 | 46.0 | 3.13e-01 | 100.0% | 25.6% |
| 5076751 | 325.1.4.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like › QRPTase_N | 0.54 | 45.0 | 3.79e-01 | 100.0% | 53.3% |
| 5051022 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 42.0 | 4.07e-01 | 94.8% | 97.1% |
| 3963351 | 325.1.4.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like › QRPTase_N | 0.52 | 43.0 | 3.46e-01 | 100.0% | 43.5% |
| 3813426 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 42.0 | 3.68e-01 | 100.0% | 57.8% |
| 3915794 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 42.0 | 3.58e-01 | 100.0% | 75.5% |
| 3629573 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.49e-01 | 98.3% | 55.5% |
| 2775273 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.50 | 45.0 | 3.50e-01 | 100.0% | 48.0% |
D2
high
residues 79-157
Domain cluster:
rep: CAKLQF020000030.1__CAH1093937.1__SAMEA5780031_03793__00037__D93-168
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00849.28 best | PseudoU_synth_2 | 51.3 | 2.10e-13 | 92.4% | 46.1% |
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i82B00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.90 | 80.0 | 5.62e-01 | 100.0% | 34.6% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.90 | 80.0 | 5.58e-01 | 100.0% | 33.0% |
| 1przA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.89 | 85.0 | 6.12e-01 | 100.0% | 40.5% |
| 1k8wA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.81 | 61.0 | 4.21e-01 | 94.9% | 25.7% |
| 1r3eA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.81 | 60.0 | 4.29e-01 | 94.9% | 28.1% |
| 2ausC02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.78 | 60.0 | 4.44e-01 | 94.9% | 33.3% |
| 1vs3A01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.78 | 66.0 | 5.94e-01 | 91.1% | 98.1% |
| 1vioA02 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.77 | 59.0 | 5.70e-01 | 93.7% | 72.2% |
| 2omlA01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.76 | 56.0 | 5.76e-01 | 92.4% | 82.4% |
| 1dj0A02 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.76 | 63.0 | 5.72e-01 | 91.1% | 96.3% |
| 2gmlA01 | 3.30.70.580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, N-terminal subdomain | 0.75 | 59.0 | 5.43e-01 | 93.7% | 66.0% |
| 2g4bA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 46.0 | 4.43e-01 | 81.0% | 63.4% |
| 2jz7A00 | 3.30.1660.30 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Selenium-binding protein | 0.65 | 42.0 | 4.25e-01 | 81.0% | 64.2% |
| 7xx8A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 42.0 | 4.21e-01 | 79.7% | 66.7% |
| 1s79A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 40.0 | 3.72e-01 | 81.0% | 51.5% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 39.0 | 3.95e-01 | 78.5% | 63.7% |
| 1x5oA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 39.0 | 3.82e-01 | 81.0% | 59.3% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 38.0 | 3.81e-01 | 78.5% | 62.0% |
| 2dnhA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 38.0 | 3.51e-01 | 77.2% | 47.6% |
| 2khdA00 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 40.0 | 3.68e-01 | 78.5% | 50.0% |
| 2qbyA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 3.99e-01 | 73.4% | 85.6% |
| 6cxhA03 | 2.60.40.1580 | Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 | 0.59 | 46.0 | 3.85e-01 | 84.8% | 61.0% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 37.0 | 3.76e-01 | 78.5% | 63.3% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 3.82e-01 | 77.2% | 60.0% |
| 1z2zA02 | 3.30.70.3160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 48.0 | 4.67e-01 | 92.4% | 94.4% |
| 2dhgA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 39.0 | 3.96e-01 | 81.0% | 69.6% |
| 2cpxA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 38.0 | 3.83e-01 | 82.3% | 67.1% |
| 2j8aA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 38.0 | 3.71e-01 | 79.7% | 62.1% |
| 1itpA00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.56 | 35.0 | 3.57e-01 | 78.5% | 62.3% |
| 1yz7A02 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.56 | 36.0 | 3.53e-01 | 77.2% | 57.8% |
| 3smzA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 47.0 | 4.41e-01 | 93.7% | 97.9% |
| 1ibcB00 | 3.30.70.1470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Caspase-like | 0.55 | 38.0 | 3.68e-01 | 70.9% | 67.0% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.54 | 34.0 | 3.40e-01 | 78.5% | 60.5% |
| 5suhA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.53 | 41.0 | 3.78e-01 | 83.5% | 72.8% |
| 3rpfA00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.53 | 48.0 | 3.90e-01 | 100.0% | 79.3% |
| 4e8uA00 | 3.30.70.2890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › XS domain | 0.53 | 43.0 | 3.44e-01 | 92.4% | 70.5% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.53 | 34.0 | 3.03e-01 | 73.4% | 43.0% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.30e-01 | 81.0% | 79.9% |
| 4z2yA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 39.0 | 2.93e-01 | 82.3% | 45.9% |
| 2go9A02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 42.0 | 4.15e-01 | 89.9% | 96.4% |
| 1lc5A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 33.0 | 2.89e-01 | 84.8% | 40.8% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 34.0 | 3.20e-01 | 78.5% | 51.9% |
| 3h2bB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 39.0 | 2.98e-01 | 84.8% | 75.5% |
| 1vjqA00 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.51 | 30.0 | 3.12e-01 | 78.5% | 61.6% |
| 2dgwA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 39.0 | 3.97e-01 | 86.1% | 97.5% |
| 2a6mA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.50 | 39.0 | 3.40e-01 | 86.1% | 77.7% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 41.0 | 3.92e-01 | 91.1% | 91.5% |
| 1vigA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 32.0 | 3.41e-01 | 77.2% | 73.2% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587449 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.98 | 96.0 | 6.50e-01 | 100.0% | 34.9% |
| 2067545 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.94 | 75.0 | 5.09e-01 | 100.0% | 26.9% |
| 4010788 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.93 | 84.0 | 5.71e-01 | 100.0% | 30.6% |
| 3647309 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 84.0 | 5.39e-01 | 100.0% | 24.5% |
| 5016214 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.92 | 86.0 | 6.03e-01 | 100.0% | 35.9% |
| 4032232 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 86.0 | 5.97e-01 | 98.7% | 35.6% |
| 3272090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 83.0 | 5.64e-01 | 100.0% | 31.0% |
| 4574643 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.91 | 81.0 | 5.69e-01 | 100.0% | 34.4% |
| 3970185 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.90 | 81.0 | 5.70e-01 | 100.0% | 34.9% |
| 3973629 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.89 | 81.0 | 5.73e-01 | 100.0% | 36.6% |
| 4132429 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 82.0 | 5.53e-01 | 100.0% | 31.0% |
| 3960722 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 80.0 | 5.51e-01 | 100.0% | 32.2% |
| 3174023 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 78.0 | 5.24e-01 | 100.0% | 28.6% |
| 3494465 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 80.0 | 4.98e-01 | 100.0% | 20.5% |
| 3288095 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 76.0 | 5.16e-01 | 100.0% | 29.0% |
| 3736056 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 80.0 | 5.27e-01 | 100.0% | 26.2% |
| 4162917 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.89 | 84.0 | 5.65e-01 | 100.0% | 31.0% |
| 4262259 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 83.0 | 5.63e-01 | 100.0% | 33.6% |
| 3963974 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 82.0 | 5.66e-01 | 100.0% | 33.3% |
| 3993090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 69.0 | 4.97e-01 | 91.1% | 32.7% |
| 3476653 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 82.0 | 5.37e-01 | 100.0% | 30.4% |
| 3463187 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 81.0 | 5.22e-01 | 100.0% | 24.8% |
| 3808723 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 82.0 | 5.43e-01 | 100.0% | 30.5% |
| 3515757 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.88 | 78.0 | 5.22e-01 | 100.0% | 27.9% |
| 3480461 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.87 | 81.0 | 5.37e-01 | 100.0% | 31.2% |
| 3595232 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.87 | 77.0 | 4.84e-01 | 100.0% | 20.8% |
| 3757181 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.87 | 81.0 | 5.35e-01 | 100.0% | 28.2% |
| 3275563 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.87 | 81.0 | 5.37e-01 | 100.0% | 29.1% |
| 3506829 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.87 | 81.0 | 5.38e-01 | 100.0% | 28.2% |
| 3274134 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.87 | 77.0 | 5.23e-01 | 100.0% | 29.6% |
| 3798375 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.86 | 81.0 | 5.33e-01 | 100.0% | 27.7% |
| 3378174 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.86 | 78.0 | 5.17e-01 | 100.0% | 27.8% |
| 3568614 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.86 | 78.0 | 5.18e-01 | 100.0% | 26.9% |
| 3624162 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.85 | 79.0 | 5.28e-01 | 100.0% | 28.2% |
| 3932039 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.85 | 79.0 | 5.18e-01 | 100.0% | 26.8% |
| 3599626 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.85 | 79.0 | 5.62e-01 | 100.0% | 44.7% |
| 3274100 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.85 | 77.0 | 5.36e-01 | 100.0% | 32.4% |
| 3937303 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.85 | 79.0 | 5.09e-01 | 100.0% | 25.6% |
| 3615345 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.85 | 77.0 | 4.98e-01 | 97.5% | 34.3% |
| 2816178 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.84 | 77.0 | 5.19e-01 | 100.0% | 29.1% |
| 4462681 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.83 | 62.0 | 4.40e-01 | 94.9% | 27.6% |
| 4605063 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.82 | 76.0 | 5.03e-01 | 100.0% | 30.3% |
| 4679181 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.80 | 61.0 | 4.30e-01 | 94.9% | 28.0% |
| 4325674 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.76 | 65.0 | 4.45e-01 | 93.7% | 99.2% |
| 4042102 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.75 | 65.0 | 4.52e-01 | 93.7% | 99.2% |
| 4193142 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.75 | 64.0 | 4.42e-01 | 93.7% | 39.8% |
| 4219826 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.75 | 64.0 | 4.45e-01 | 93.7% | 77.0% |
| 4475204 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.75 | 64.0 | 4.41e-01 | 93.7% | 96.9% |
| 4468182 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.75 | 64.0 | 4.47e-01 | 93.7% | 75.5% |
| 4205662 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.74 | 64.0 | 4.39e-01 | 93.7% | 71.9% |
| 4369841 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.74 | 63.0 | 4.42e-01 | 93.7% | 77.1% |
| 4609163 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.74 | 63.0 | 4.39e-01 | 93.7% | 77.6% |
| 4936296 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.73 | 62.0 | 4.31e-01 | 93.7% | 85.7% |
| 4067859 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.73 | 62.0 | 4.38e-01 | 93.7% | 98.8% |
| 5043875 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.72 | 62.0 | 4.28e-01 | 93.7% | 86.9% |
| 4552975 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.72 | 62.0 | 4.54e-01 | 94.9% | 99.0% |
| 5082266 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.71 | 61.0 | 4.26e-01 | 93.7% | 67.3% |
| 184732 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.60 | 40.0 | 3.68e-01 | 78.5% | 50.0% |
| 3966321 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.59 | 40.0 | 3.77e-01 | 78.5% | 56.0% |
| 4647263 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.59 | 37.0 | 3.78e-01 | 77.2% | 64.1% |
| 3829359 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 41.0 | 4.02e-01 | 78.5% | 68.2% |
| 5044757 | 312.1.1.0 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related | 0.58 | 43.0 | 3.89e-01 | 83.5% | 56.5% |
| 4946121 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.55 | 48.0 | 3.57e-01 | 98.7% | 47.7% |
| 4492610 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.55 | 46.0 | 3.47e-01 | 93.7% | 42.5% |
| 4602972 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 43.0 | 3.33e-01 | 94.9% | 47.2% |
| 4998406 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.52 | 33.0 | 3.31e-01 | 78.5% | 61.3% |
| 3382794 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.52 | 43.0 | 2.93e-01 | 93.7% | 39.3% |
| 5006368 | 304.4.1.20 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 | 0.52 | 34.0 | 3.40e-01 | 100.0% | 63.5% |
| 4018204 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.51 | 37.0 | 3.43e-01 | 79.7% | 68.2% |
| 4257947 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.51 | 39.0 | 2.88e-01 | 83.5% | 39.7% |
| 3188905 | 4014.1.1.1 ↗ | a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV | 0.50 | 37.0 | 2.90e-01 | 84.8% | 35.0% |
| 5040415 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.50 | 35.0 | 3.30e-01 | 75.9% | 57.1% |
D3
high
residues 161-296
Domain cluster:
rep: CAKLQF020000007.1__CAH1081667.1__SAMEA5780031_01620__00027__D87-188
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00849.28 best | PseudoU_synth_2 | 47.3 | 3.80e-12 | 56.6% | 50.7% |