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MK448987.1__QBX30793.1__Javan576_0005__00063
Bact-VirMK448987.1__QBX30793.1__Javan576_0005__00063
Identity
- Accession:
- MK448987 ↗
- Kingdom:
- phage
Quality
88.8
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-145
Domain cluster:
rep: SR-VP_0-2_scaffold_141_6063796_prodigal-single.1__X__X__00254__D3-128
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04607.24 best | RelA_SpoT | 95.7 | 2.90e-27 | 72.3% | 81.4% |
D2
high
residues 149-201
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b43A01 | 1.10.10.2480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.81 | 64.0 | 5.90e-01 | 84.9% | 73.5% |
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 72.0 | 6.47e-01 | 100.0% | 95.8% |
| 3g80A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.78 | 66.0 | 5.91e-01 | 100.0% | 67.1% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.75 | 65.0 | 3.99e-01 | 100.0% | 39.4% |
| 3ilkA02 | 1.10.8.590 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 47.0 | 4.35e-01 | 73.6% | 76.5% |
| 4hb9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 53.0 | 3.26e-01 | 100.0% | 14.4% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.62 | 49.0 | 3.40e-01 | 86.8% | 40.6% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.61 | 47.0 | 3.53e-01 | 94.3% | 30.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999868 | 604.1.1.264 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Oxidored_q2 | 0.92 | 81.0 | 6.65e-01 | 94.3% | 55.6% |
| 5048188 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.83 | 70.0 | 4.89e-01 | 100.0% | 30.6% |
| 3586355 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.72 | 56.0 | 3.48e-01 | 90.6% | 14.9% |
| 4946932 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 45.0 | 4.23e-01 | 75.5% | 56.9% |