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MK448990.1__QBX30962.1__Javan584_0024__00024

Bact-Vir

MK448990.1__QBX30962.1__Javan584_0024__00024

Identity

Accession:
MK448990 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-110
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 53.0 4.60e-01 80.6% 47.8%
6a95A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.76 52.0 4.02e-01 87.1% 34.9%
1nv8B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.73 53.0 5.07e-01 77.4% 70.4%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 55.0 4.47e-01 87.1% 78.8%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 52.0 4.12e-01 80.6% 50.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.68 52.0 5.24e-01 93.5% 80.3%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 51.0 4.81e-01 87.1% 66.7%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.68 50.0 4.36e-01 93.5% 52.7%
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.67 58.0 5.63e-01 100.0% 91.3%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.67 58.0 4.44e-01 98.4% 91.0%
2efjA01 1.10.1200.270 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain 0.66 53.0 4.12e-01 87.1% 68.7%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 47.0 3.83e-01 93.5% 40.7%
5f2kB01 1.10.1200.270 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Methyltransferase, alpha-helical capping domain 0.66 56.0 4.33e-01 96.8% 68.3%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 46.0 4.73e-01 80.6% 77.6%
6ifsB02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.66 44.0 4.22e-01 71.0% 60.6%
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.65 40.0 4.15e-01 77.4% 65.0%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 58.0 4.68e-01 96.8% 53.6%
1jb0K00 1.20.860.20 Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre 0.65 46.0 5.16e-01 98.4% 100.0%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 55.0 4.12e-01 95.2% 75.0%
1b8pA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.64 49.0 3.57e-01 82.3% 29.7%
3gzfD00 1.10.150.420 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus 0.64 39.0 3.45e-01 74.2% 41.8%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.64 47.0 4.38e-01 93.5% 63.2%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 56.0 3.87e-01 100.0% 45.2%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.64 54.0 5.30e-01 95.2% 88.2%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 51.0 4.89e-01 93.5% 74.6%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 49.0 3.98e-01 82.3% 83.0%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.63 54.0 4.54e-01 93.5% 79.6%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 46.0 3.78e-01 77.4% 48.2%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.63 48.0 4.26e-01 96.8% 57.1%
3dkaB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.62 55.0 4.26e-01 98.4% 91.1%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.62 48.0 3.88e-01 87.1% 43.8%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 51.0 5.12e-01 93.5% 90.5%
1bccH00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.61 52.0 5.12e-01 96.8% 100.0%
1b10A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.60 50.0 4.30e-01 95.2% 57.7%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 49.0 3.65e-01 87.1% 92.0%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.60 48.0 4.54e-01 93.5% 72.6%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.60 54.0 4.36e-01 98.4% 73.5%
3a8tA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.60 51.0 4.29e-01 100.0% 87.4%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.59 51.0 3.94e-01 93.5% 44.4%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.58 49.0 4.32e-01 95.2% 64.1%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.58 42.0 3.06e-01 87.1% 25.4%
1uajA02 1.10.1270.20 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 0.57 41.0 3.90e-01 96.8% 64.4%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 49.0 4.23e-01 98.4% 61.5%
2x9xA04 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 41.0 4.38e-01 85.5% 87.0%
4ikhA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 45.0 3.56e-01 87.1% 44.1%
3hhcC00 1.20.1250.60 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda 0.56 48.0 3.62e-01 95.2% 42.4%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.55 48.0 4.10e-01 95.2% 61.1%
1p8dB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.55 46.0 3.19e-01 100.0% 26.8%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.53 42.0 3.63e-01 87.1% 57.7%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 35.0 2.78e-01 77.4% 34.9%
2c35A00 1.20.1250.40 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit 0.50 40.0 3.20e-01 87.1% 58.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2622460 3396.1.1.1 extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N 0.79 66.0 6.36e-01 98.4% 80.0%
3388455 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 68.0 5.46e-01 100.0% 53.0%
3674195 103.9.1.1 alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain › WPP 0.75 62.0 5.16e-01 100.0% 53.3%
3386547 4168.1.1.0 alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain 0.73 41.0 4.25e-01 93.5% 58.3%
3483479 101.8.1.0 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.73 55.0 3.88e-01 80.6% 27.0%
5054424 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.73 60.0 5.52e-01 96.8% 70.0%
3706130 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.72 57.0 4.97e-01 87.1% 63.2%
3940867 632.22.1.67 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF842 0.71 63.0 5.48e-01 100.0% 88.4%
4242465 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.70 60.0 5.23e-01 100.0% 63.2%
3270180 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.70 63.0 5.56e-01 100.0% 78.9%
3797019 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 60.0 3.81e-01 95.2% 40.3%
3719527 2486.1.1.11 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_2 0.69 57.0 3.23e-01 87.1% 10.3%
3783361 109.4.1.522 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPAP1_C 0.69 53.0 3.69e-01 96.8% 25.4%
3181688 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.69 48.0 3.78e-01 87.1% 35.4%
5038847 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 53.0 5.08e-01 82.3% 74.3%
3919989 192.5.1.19 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › OCIA 0.68 59.0 5.49e-01 100.0% 76.2%
3732046 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.68 52.0 5.42e-01 82.3% 96.4%
3593203 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 61.0 5.15e-01 100.0% 63.0%
4625812 2006.1.4.8 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 0.66 59.0 3.92e-01 98.4% 26.2%
3389798 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.66 54.0 5.27e-01 100.0% 81.4%
3962381 150.5.1.50 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › EspA_EspE 0.66 52.0 4.78e-01 93.5% 66.3%
3881428 3835.1.1.1 alpha bundles › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › Type I hyperactive antifreeze protein › PLC-beta_C 0.66 60.0 4.14e-01 98.4% 47.4%
5073340 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 55.0 4.31e-01 93.5% 53.8%
4887928 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.65 53.0 5.16e-01 91.9% 88.6%
3722134 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 45.0 3.16e-01 72.6% 49.7%
5018716 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.65 49.0 4.76e-01 90.3% 72.9%
3229717 3470.1.1.29 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › COPIIcoated_ERV 0.63 54.0 5.26e-01 96.8% 85.7%
4029168 4984.1.1.0 alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain 0.63 50.0 3.95e-01 87.1% 41.5%
4334017 601.1.1.43 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Serendipity_A 0.63 58.0 4.57e-01 100.0% 94.2%
3578586 323.1.1.6 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.63 55.0 3.11e-01 100.0% 10.4%
2412 532.2.1.3 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › TyeA 0.63 48.0 4.26e-01 96.8% 57.1%
3695164 196.1.1.0 alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS 0.63 48.0 4.22e-01 83.9% 89.2%
3720382 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.62 49.0 3.46e-01 90.3% 27.4%
3495550 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 56.0 4.67e-01 100.0% 88.6%
3952598 150.7.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE 0.62 50.0 4.39e-01 87.1% 60.0%
3601239 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.62 49.0 3.32e-01 91.9% 23.6%
3234298 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 45.0 4.76e-01 87.1% 87.3%
3714005 5054.1.1.61 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › ELO 0.62 55.0 3.65e-01 100.0% 30.6%
3530312 2485.1.1.120 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Strabismus 0.61 51.0 4.06e-01 93.5% 93.1%
4014485 5044.1.1.0 extended segments › PsbZ-like › PsbZ-like › PsbZ-like 0.61 49.0 4.24e-01 87.1% 68.4%
3846390 2008.1.1.84 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector 0.60 47.0 3.29e-01 87.1% 26.5%
3929410 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.60 52.0 3.10e-01 93.5% 37.7%
3175064 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.60 48.0 3.30e-01 96.8% 23.5%
3414102 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.59 50.0 4.90e-01 98.4% 100.0%
3396876 622.4.1.50 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Casc1_N 0.59 46.0 3.34e-01 96.8% 29.0%
4226297 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.59 43.0 3.44e-01 80.6% 39.2%
3641266 6158.1.1.0 alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.59 50.0 4.37e-01 96.8% 64.2%
3813837 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.58 45.0 4.29e-01 93.5% 72.0%
5052914 159.1.3.3 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 › MazG 0.57 41.0 3.50e-01 93.5% 47.0%
3249649 5059.1.1.3 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.56 49.0 3.12e-01 100.0% 99.7%
4009717 604.24.1.1 alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › PaaX_C 0.56 43.0 3.63e-01 90.3% 48.6%
3928846 7022.1.1.0 alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein 0.56 50.0 3.85e-01 100.0% 86.4%
3329547 604.6.1.22 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 0.56 47.0 3.93e-01 95.2% 53.6%
3257573 633.6.1.2 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX 0.55 48.0 3.52e-01 96.8% 68.2%
3578256 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.54 46.0 4.48e-01 95.2% 87.1%