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MK448991.1__QBX31001.1__Javan590_0009__00044
Bact-VirMK448991.1__QBX31001.1__Javan590_0009__00044
Identity
- Accession:
- MK448991 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 24-104
Domain cluster:
representative
CATH (56)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.85 | 75.0 | 6.77e-01 | 100.0% | 72.4% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.84 | 75.0 | 6.22e-01 | 100.0% | 56.9% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.75 | 65.0 | 5.85e-01 | 96.3% | 69.7% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.73 | 55.0 | 4.92e-01 | 98.8% | 58.0% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.71 | 51.0 | 4.23e-01 | 93.8% | 43.6% |
| 5is2A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.70 | 48.0 | 4.68e-01 | 100.0% | 63.7% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.70 | 48.0 | 4.75e-01 | 100.0% | 68.2% |
| 2cg8B02 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.69 | 48.0 | 4.10e-01 | 100.0% | 44.7% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.69 | 50.0 | 4.73e-01 | 100.0% | 64.6% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.67 | 55.0 | 4.79e-01 | 95.1% | 60.5% |
| 6u6pA01 | 3.30.1070.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE | 0.65 | 48.0 | 4.95e-01 | 88.9% | 80.8% |
| 3njcA00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.64 | 49.0 | 3.97e-01 | 92.6% | 43.1% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 35.0 | 3.66e-01 | 74.1% | 57.9% |
| 2fmaA00 | 3.30.1490.140 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain | 0.62 | 43.0 | 4.86e-01 | 90.1% | 100.0% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 55.0 | 5.02e-01 | 100.0% | 79.6% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.61 | 53.0 | 4.78e-01 | 97.5% | 92.1% |
| 3tx8A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 54.0 | 4.84e-01 | 98.8% | 78.1% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.61 | 47.0 | 3.85e-01 | 98.8% | 44.7% |
| 2edmA00 | 2.60.40.2770 | Mainly Beta › Sandwich › Immunoglobulin-like › WSSV envelope protein-like | 0.60 | 48.0 | 3.87e-01 | 100.0% | 44.1% |
| 1r3eA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.60 | 52.0 | 3.85e-01 | 98.8% | 47.5% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.60 | 49.0 | 4.25e-01 | 100.0% | 58.4% |
| 1we8A01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 41.0 | 4.10e-01 | 93.8% | 70.2% |
| 5heeA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.59 | 49.0 | 3.50e-01 | 93.8% | 99.2% |
| 2j3rB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.58 | 43.0 | 3.55e-01 | 93.8% | 41.4% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.58 | 47.0 | 4.85e-01 | 97.5% | 97.3% |
| 4e6fA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.58 | 49.0 | 3.96e-01 | 98.8% | 76.6% |
| 1go3E02 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.57 | 49.0 | 4.94e-01 | 96.3% | 100.0% |
| 2h6oA02 | 2.60.40.2810 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 50.0 | 4.09e-01 | 100.0% | 66.5% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 47.0 | 4.15e-01 | 97.5% | 65.1% |
| 2qndA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 41.0 | 4.17e-01 | 93.8% | 78.8% |
| 3cddA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.56 | 47.0 | 3.70e-01 | 96.3% | 58.2% |
| 1fthA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 46.0 | 4.12e-01 | 92.6% | 99.1% |
| 2g5fB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.55 | 48.0 | 3.08e-01 | 100.0% | 21.2% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 49.0 | 4.04e-01 | 100.0% | 63.9% |
| 5cxdB01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 47.0 | 4.12e-01 | 95.1% | 98.3% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 46.0 | 3.86e-01 | 93.8% | 62.7% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 45.0 | 3.49e-01 | 92.6% | 51.9% |
| 2e5aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 45.0 | 3.20e-01 | 90.1% | 43.2% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.97e-01 | 100.0% | 66.7% |
| 4llfD02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 3.74e-01 | 97.5% | 57.5% |
| 4tpvA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.54 | 43.0 | 3.43e-01 | 91.4% | 45.6% |
| 1q2lA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 47.0 | 3.45e-01 | 100.0% | 88.7% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 47.0 | 3.73e-01 | 98.8% | 72.5% |
| 5t89X01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 33.0 | 3.30e-01 | 98.8% | 59.0% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.53 | 42.0 | 4.19e-01 | 98.8% | 82.4% |
| 2nykA02 | 2.60.40.2530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 3.82e-01 | 97.5% | 71.3% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 45.0 | 3.37e-01 | 100.0% | 65.8% |
| 2flhB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 44.0 | 3.74e-01 | 100.0% | 84.3% |
| 3p51A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 3.74e-01 | 97.5% | 82.8% |
| 3os6C00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.52 | 44.0 | 2.93e-01 | 97.5% | 62.4% |
| 4of0A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 46.0 | 3.97e-01 | 98.8% | 85.5% |
| 1x6cA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 35.0 | 3.16e-01 | 72.8% | 53.4% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 43.0 | 3.82e-01 | 95.1% | 85.2% |
| 2zahA02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 3.66e-01 | 97.5% | 57.8% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.51 | 44.0 | 3.32e-01 | 100.0% | 68.6% |
| 5jxzA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.51 | 43.0 | 2.82e-01 | 96.3% | 60.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954561 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.85 | 78.0 | 6.46e-01 | 98.8% | 62.2% |
| 1444177 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.84 | 73.0 | 6.07e-01 | 97.5% | 55.9% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.82 | 73.0 | 6.07e-01 | 95.1% | 59.7% |
| 4888732 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.81 | 72.0 | 5.75e-01 | 100.0% | 50.0% |
| 5082705 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.80 | 72.0 | 6.51e-01 | 100.0% | 74.3% |
| 4032562 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.76 | 67.0 | 5.67e-01 | 95.1% | 61.5% |
| 4952629 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 58.0 | 5.44e-01 | 95.1% | 71.0% |
| 3450619 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.71 | 59.0 | 5.50e-01 | 100.0% | 73.0% |
| 4028502 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.67 | 54.0 | 4.72e-01 | 93.8% | 59.2% |
| 4923979 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.64 | 50.0 | 3.91e-01 | 97.5% | 37.4% |
| 4984619 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.61 | 54.0 | 4.75e-01 | 98.8% | 78.3% |
| 4964134 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.61 | 53.0 | 4.60e-01 | 97.5% | 64.2% |
| 4072272 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.61 | 53.0 | 4.69e-01 | 97.5% | 87.5% |
| 4599972 | 306.7.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain | 0.61 | 53.0 | 4.72e-01 | 96.3% | 90.4% |
| 4431976 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.60 | 53.0 | 4.72e-01 | 96.3% | 90.4% |
| 5028560 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.60 | 53.0 | 4.78e-01 | 100.0% | 71.8% |
| 4930862 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.59 | 51.0 | 4.51e-01 | 98.8% | 65.0% |
| 3791442 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.58 | 50.0 | 4.78e-01 | 96.3% | 82.1% |
| 3586352 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.58 | 49.0 | 4.57e-01 | 95.1% | 73.3% |
| 1841011 | 331.3.1.16 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF4468 | 0.58 | 50.0 | 3.99e-01 | 98.8% | 75.7% |
| 3344504 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.58 | 42.0 | 4.56e-01 | 97.5% | 96.9% |
| 3627282 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.57 | 48.0 | 4.56e-01 | 95.1% | 77.0% |
| 4960006 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 46.0 | 4.22e-01 | 100.0% | 67.0% |
| 4994786 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.57 | 45.0 | 4.69e-01 | 92.6% | 94.7% |
| 3808257 | 331.4.1.33 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CCB1 | 0.57 | 47.0 | 4.67e-01 | 93.8% | 87.1% |
| 4263572 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.55 | 38.0 | 3.67e-01 | 71.6% | 88.9% |
| 5035567 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.54 | 40.0 | 4.32e-01 | 85.2% | 91.3% |
| 3735123 | 331.3.1.30 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 | 0.53 | 46.0 | 3.25e-01 | 100.0% | 60.6% |
| 4930505 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 45.0 | 4.07e-01 | 95.1% | 95.5% |
| 3283688 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 45.0 | 3.89e-01 | 96.3% | 83.1% |
| 3993872 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.52 | 45.0 | 3.49e-01 | 100.0% | 59.8% |
| 4950249 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.52 | 43.0 | 3.96e-01 | 93.8% | 95.5% |
| 4980076 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 44.0 | 3.67e-01 | 96.3% | 73.1% |
| 2036982 | 223.1.1.111 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS, PAS_9 | 0.51 | 42.0 | 3.57e-01 | 90.1% | 85.2% |
| 3386050 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.51 | 44.0 | 3.94e-01 | 96.3% | 91.3% |
| 4299801 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.51 | 43.0 | 3.82e-01 | 95.1% | 84.2% |
| 4950576 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.50 | 43.0 | 3.60e-01 | 96.3% | 73.8% |
| 3971676 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 43.0 | 3.83e-01 | 96.3% | 87.5% |
| 3386035 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.50 | 43.0 | 3.65e-01 | 95.1% | 77.0% |
| 3970094 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 43.0 | 3.56e-01 | 96.3% | 70.0% |
| 4945191 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 43.0 | 3.75e-01 | 96.3% | 84.0% |