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MK448991.1__QBX31009.1__Javan590_0017__00036

Bact-Vir

MK448991.1__QBX31009.1__Javan590_0017__00036

Identity

Accession:
MK448991 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan590

TaxID: 2548278

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-55
PDB
Domain cluster: rep: MK448830.1__QBX22429.1__Javan73_0040__00040__D6-55
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vw4G00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.80 60.0 5.93e-01 96.1% 76.4%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.77 56.0 5.60e-01 94.1% 76.9%
3jc6C00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 65.0 4.61e-01 100.0% 32.7%
2e9xG00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 64.0 4.34e-01 100.0% 27.9%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.69 53.0 5.51e-01 98.0% 100.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.60e-01 100.0% 93.9%
5yprA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 4.99e-01 98.0% 97.6%
3kfvA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 4.53e-01 96.1% 87.0%
1y7xA02 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.66 50.0 4.92e-01 100.0% 78.6%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 4.59e-01 96.1% 90.3%
4fsdA02 3.40.5.100 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.65 53.0 4.67e-01 100.0% 67.4%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 54.0 5.29e-01 94.1% 100.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.45e-01 96.1% 98.2%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.34e-01 100.0% 100.0%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 50.0 4.84e-01 84.3% 100.0%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 4.86e-01 88.2% 95.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.19e-01 98.0% 92.2%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.25e-01 92.2% 100.0%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.17e-01 92.2% 100.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.28e-01 98.0% 96.7%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.62e-01 70.6% 81.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.03e-01 96.1% 93.9%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.07e-01 94.1% 98.3%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 4.98e-01 96.1% 87.7%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.11e-01 96.1% 96.7%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.14e-01 94.1% 98.2%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 4.84e-01 96.1% 84.3%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 4.82e-01 94.1% 95.5%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 4.74e-01 96.1% 85.1%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 5.10e-01 98.0% 96.8%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 54.0 4.88e-01 98.0% 85.7%
5v7qZ00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.62 53.0 5.13e-01 100.0% 98.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 5.09e-01 96.1% 100.0%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 4.50e-01 94.1% 70.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 52.0 5.00e-01 96.1% 98.3%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 4.95e-01 94.1% 100.0%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.64e-01 96.1% 97.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 53.0 5.12e-01 98.0% 100.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 54.0 4.56e-01 100.0% 77.4%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.88e-01 96.1% 96.8%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 4.77e-01 94.1% 96.9%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 51.0 4.25e-01 96.1% 69.6%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 4.97e-01 98.0% 100.0%
2outA01 3.40.5.80 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.60 47.0 4.66e-01 96.1% 89.5%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 4.40e-01 100.0% 88.4%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.76e-01 94.1% 98.3%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.59 50.0 3.31e-01 94.1% 30.4%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 50.0 4.60e-01 96.1% 91.0%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.60e-01 94.1% 95.2%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.60e-01 96.1% 98.4%
1jj7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 39.0 2.60e-01 70.6% 27.8%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 4.09e-01 96.1% 92.6%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 50.0 4.26e-01 100.0% 72.9%
2kwpA00 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.57 41.0 3.16e-01 80.4% 90.7%
5bpxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.42e-01 98.0% 45.1%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.51e-01 94.1% 80.4%
5gjnA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.50 39.0 3.06e-01 98.0% 75.2%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031645 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.88 79.0 8.04e-01 96.1% 100.0%
4933005 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 68.0 6.43e-01 98.0% 83.3%
3691283 4076.3.1.9 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C 0.76 65.0 6.59e-01 96.1% 96.0%
3592220 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.76 63.0 5.58e-01 96.1% 63.5%
3712471 4076.1.1.1 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.76 63.0 5.70e-01 96.1% 68.1%
3407377 4076.3.1.9 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C 0.75 66.0 6.28e-01 96.1% 83.1%
4932084 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 67.0 6.79e-01 98.0% 100.0%
4566383 4076.3.1.8 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.75 66.0 6.08e-01 98.0% 76.9%
5024995 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 64.0 6.38e-01 98.0% 92.5%
4956745 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.74 63.0 6.43e-01 94.1% 96.0%
5083883 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 59.0 6.26e-01 98.0% 100.0%
5063665 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.74 58.0 6.13e-01 92.2% 97.8%
4021638 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.73 62.0 5.78e-01 96.1% 75.4%
5033467 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 61.0 6.27e-01 94.1% 97.9%
4939553 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.69 56.0 5.64e-01 96.1% 92.0%
3893892 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 59.0 5.13e-01 98.0% 98.8%
5009 4076.3.1.2 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.68 54.0 5.50e-01 100.0% 95.9%
4932061 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.68 54.0 5.65e-01 92.2% 100.0%
4613882 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.68 54.0 5.43e-01 96.1% 92.0%
3886721 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 4.85e-01 98.0% 93.3%
4480106 4954.1.1.1 ↗ a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.67 50.0 3.42e-01 100.0% 21.5%
4083057 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 53.0 5.39e-01 96.1% 92.0%
4169249 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.66 53.0 5.47e-01 94.1% 95.8%
3188732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 56.0 4.90e-01 96.1% 78.7%
3022801 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 57.0 4.80e-01 100.0% 73.6%
3908332 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 55.0 5.02e-01 92.2% 87.7%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.30e-01 96.1% 100.0%
3886646 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 56.0 5.14e-01 96.1% 87.7%
3243949 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 55.0 5.16e-01 92.2% 95.0%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.07e-01 98.0% 92.9%
4680114 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 56.0 4.94e-01 98.0% 80.0%
4082863 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 55.0 4.99e-01 96.1% 84.3%
3398175 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 57.0 5.22e-01 98.0% 92.3%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 55.0 4.97e-01 96.1% 82.9%
2834765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 54.0 4.89e-01 94.1% 81.2%
3743973 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 56.0 4.82e-01 98.0% 77.5%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.94e-01 96.1% 84.3%
4200990 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 51.0 5.14e-01 96.1% 92.0%
4419456 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.63 49.0 5.02e-01 94.1% 91.8%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 4.86e-01 98.0% 78.7%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.00e-01 96.1% 96.9%
4003181 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 53.0 4.99e-01 92.2% 100.0%
3788021 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 56.0 4.92e-01 100.0% 82.7%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 5.19e-01 96.1% 96.7%
3583296 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 54.0 4.92e-01 98.0% 92.9%
4934987 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.63 47.0 4.96e-01 90.2% 95.6%
3937006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.79e-01 98.0% 97.4%
3539147 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 4.96e-01 98.0% 82.9%
3526950 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 54.0 5.14e-01 96.1% 95.0%
3906249 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 54.0 4.74e-01 96.1% 76.0%
3698582 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 55.0 4.93e-01 98.0% 88.6%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.02e-01 90.2% 100.0%
3914346 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 53.0 4.40e-01 96.1% 63.3%
165657 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 52.0 4.78e-01 94.1% 83.6%
162441 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 53.0 4.75e-01 96.1% 80.3%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.79e-01 96.1% 82.9%
3898363 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 54.0 4.86e-01 98.0% 82.9%
3626531 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 53.0 4.37e-01 96.1% 67.8%
423468 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 54.0 4.57e-01 100.0% 75.3%
3498357 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 52.0 4.72e-01 96.1% 84.3%
3784968 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 53.0 4.59e-01 100.0% 88.7%
3585452 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.60 53.0 4.75e-01 98.0% 97.1%
3921563 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 51.0 4.43e-01 96.1% 73.8%
4001116 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 53.0 4.79e-01 100.0% 95.7%
2794885 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.59 46.0 4.40e-01 100.0% 73.4%
2717779 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 49.0 4.23e-01 96.1% 72.0%
5025982 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 46.0 4.01e-01 96.1% 57.5%
3658156 205.1.1.19 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 0.57 45.0 3.55e-01 98.0% 51.1%
3927565 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 41.0 2.69e-01 84.3% 46.9%