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MK448991.1__QBX31038.1__Javan590_0046__00007

Bact-Vir

MK448991.1__QBX31038.1__Javan590_0046__00007

Identity

Accession:
MK448991 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan590

TaxID: 2548278

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-81
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.68 49.0 4.05e-01 77.5% 99.2%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.67 49.0 3.99e-01 76.1% 48.8%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.67 59.0 4.92e-01 97.2% 75.0%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.67 47.0 3.89e-01 74.6% 50.8%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.67 45.0 3.37e-01 74.6% 31.2%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.65 47.0 3.90e-01 80.3% 45.8%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 44.0 2.75e-01 70.4% 14.4%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 45.0 4.02e-01 78.9% 54.6%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 49.0 3.71e-01 83.1% 46.6%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 3.04e-01 78.9% 88.3%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.62 52.0 3.41e-01 94.4% 89.6%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 45.0 2.99e-01 78.9% 98.0%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 44.0 2.96e-01 78.9% 95.1%
5tgfD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 44.0 2.90e-01 78.9% 83.1%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.59 50.0 2.89e-01 93.0% 54.4%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 43.0 2.80e-01 78.9% 96.2%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 44.0 2.81e-01 80.3% 51.9%
4pswB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 43.0 2.71e-01 78.9% 85.2%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 2.81e-01 77.5% 97.3%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 48.0 4.12e-01 97.2% 96.0%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 44.0 3.31e-01 80.3% 47.5%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 3.83e-01 91.5% 70.2%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 50.0 4.07e-01 94.4% 81.7%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 40.0 2.56e-01 74.6% 83.7%
6kjhA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 41.0 2.65e-01 78.9% 87.1%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 44.0 3.61e-01 85.9% 75.0%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.95e-01 91.5% 88.9%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.55 44.0 2.61e-01 88.7% 13.2%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.54 36.0 3.86e-01 78.9% 86.0%
4w82A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.53 36.0 2.87e-01 70.4% 53.7%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 38.0 2.50e-01 77.5% 97.4%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 42.0 3.83e-01 90.1% 84.7%
3gqsB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 42.0 3.74e-01 90.1% 87.1%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 38.0 3.23e-01 81.7% 94.3%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 45.0 2.95e-01 100.0% 92.0%
4cvbA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.50 41.0 2.41e-01 88.7% 89.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390746 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.75 49.0 3.54e-01 70.4% 25.4%
4668665 331.2.1.8 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.73 61.0 5.66e-01 93.0% 95.6%
4024970 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.72 49.0 2.99e-01 70.4% 13.7%
3516953 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.70 59.0 4.13e-01 93.0% 94.6%
1512998 3953.1.1.1 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N 0.68 46.0 4.41e-01 71.8% 74.1%
3660003 5.1.10.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 0.67 42.0 4.07e-01 70.4% 56.2%
5068955 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.67 50.0 4.13e-01 80.3% 77.7%
5025229 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.67 49.0 4.05e-01 78.9% 75.2%
3240986 331.18.1.7 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › DUF3557 0.67 49.0 4.27e-01 78.9% 56.4%
3565087 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.66 55.0 4.07e-01 91.5% 92.4%
4029129 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 45.0 2.87e-01 70.4% 15.5%
4950203 331.4.1.35 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 0.65 55.0 3.87e-01 94.4% 84.7%
3392393 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.65 47.0 2.90e-01 74.6% 14.6%
1099835 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.65 46.0 3.97e-01 73.2% 56.6%
3510260 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 44.0 2.93e-01 70.4% 17.9%
5022991 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 56.0 5.18e-01 97.2% 81.1%
3716765 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 52.0 3.03e-01 87.3% 74.3%
3461988 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.64 43.0 2.75e-01 70.4% 15.1%
3924096 5.1.4.102 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 0.61 42.0 2.74e-01 70.4% 20.3%
3596935 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 44.0 2.84e-01 77.5% 80.9%
3482099 5.1.4.237 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_2nd 0.61 42.0 2.89e-01 70.4% 26.4%
3406724 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.60 48.0 3.71e-01 91.5% 96.7%
3787223 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.60 50.0 2.97e-01 88.7% 19.6%
4022963 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 43.0 2.64e-01 74.6% 22.2%
3806989 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.60 40.0 2.69e-01 70.4% 19.6%
4027162 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.60 45.0 2.74e-01 78.9% 90.6%
3168231 5.1.4.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.58 43.0 2.68e-01 78.9% 81.5%
3975056 241.13.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA 0.58 43.0 3.48e-01 77.5% 83.1%
1488714 5.1.4.258 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.57 42.0 2.70e-01 77.5% 55.3%
1107292 5.1.4.53 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF4784 0.57 39.0 2.62e-01 71.8% 18.5%
3211708 145.1.1.30 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › FBA_2 0.57 42.0 2.85e-01 78.9% 23.3%
363983 234.1.1.1 ↗ a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases › Ribonuclease 0.56 41.0 3.74e-01 78.9% 90.5%
1196305 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 48.0 3.08e-01 98.6% 91.1%
4594778 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.53 45.0 2.47e-01 91.5% 72.7%
3190060 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 40.0 2.60e-01 90.1% 91.4%