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MK448998.1__QBX31387.1__Javan636_0032__00031

Bact-Vir

MK448998.1__QBX31387.1__Javan636_0032__00031

Identity

Accession:
MK448998 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan636

TaxID: 2548291

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: rep: NC_015253.1__YP_004301378.1__BrPhBA9_gp045__00045__D2-71
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.63 43.0 3.80e-01 71.8% 89.9%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 57.0 4.68e-01 100.0% 60.3%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 37.0 4.28e-01 71.8% 87.2%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.61 54.0 4.33e-01 100.0% 89.4%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.16e-01 78.9% 83.1%
3hufA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 53.0 4.54e-01 100.0% 96.6%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.60 48.0 4.35e-01 100.0% 65.2%
1y8xB00 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.59 46.0 4.29e-01 85.9% 100.0%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.59 50.0 4.27e-01 100.0% 89.8%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 53.0 4.21e-01 100.0% 72.1%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 52.0 4.23e-01 100.0% 57.5%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 41.0 2.46e-01 73.2% 12.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 46.0 4.31e-01 88.7% 98.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 45.0 3.54e-01 87.3% 95.2%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 34.0 3.56e-01 100.0% 63.6%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 37.0 3.34e-01 100.0% 46.9%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 39.0 3.29e-01 73.2% 94.7%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.58e-01 88.7% 51.0%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.64e-01 88.7% 48.8%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.55 41.0 3.40e-01 81.7% 43.7%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 39.0 3.39e-01 76.1% 71.7%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.55 47.0 4.14e-01 100.0% 91.8%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.54 41.0 3.37e-01 88.7% 91.5%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 34.0 3.85e-01 100.0% 93.9%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 43.0 3.36e-01 91.5% 95.8%
1nj4A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 44.0 3.00e-01 90.1% 43.6%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.59e-01 100.0% 88.6%
4cvuA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.21e-01 94.4% 87.9%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.52 38.0 3.34e-01 83.1% 80.0%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 42.0 4.37e-01 100.0% 94.0%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.79e-01 87.3% 80.7%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 46.0 3.00e-01 100.0% 100.0%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 37.0 3.24e-01 78.9% 71.6%
3rkgA01 2.40.128.330 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 4.07e-01 100.0% 81.9%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 30.0 3.44e-01 70.4% 87.2%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.50 45.0 4.06e-01 100.0% 99.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4100169 223.1.1.155 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PHY, PAS, GAF, PAS_2 0.62 50.0 2.92e-01 90.1% 34.5%
5032395 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 3.50e-01 73.2% 92.8%
5045351 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.57e-01 71.8% 100.0%
4971503 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 43.0 3.66e-01 81.7% 100.0%
4979423 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 39.0 3.27e-01 73.2% 91.1%
4964955 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.56 38.0 3.22e-01 71.8% 94.6%
4972248 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.23e-01 73.2% 96.2%
5045239 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.22e-01 74.6% 92.3%
4948155 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.18e-01 73.2% 95.4%
3201557 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 2.86e-01 77.5% 46.2%
4945301 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 49.0 3.76e-01 100.0% 49.3%
4979841 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.42e-01 88.7% 85.9%
4943458 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 3.07e-01 73.2% 93.8%
4996048 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 46.0 3.71e-01 100.0% 56.9%