←Back to structures
MK448998.1__QBX31388.1__Javan636_0033__00030
Bact-VirMK448998.1__QBX31388.1__Javan636_0033__00030
Identity
- Accession:
- MK448998 ↗
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-76
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.68 | 48.0 | 3.69e-01 | 95.7% | 32.5% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 37.0 | 3.96e-01 | 73.9% | 70.5% |
| 2vt8A00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.60 | 41.0 | 3.30e-01 | 72.5% | 94.4% |
| 3io5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 3.03e-01 | 84.1% | 93.0% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.57 | 49.0 | 3.91e-01 | 95.7% | 66.4% |
| 2yvkA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.56 | 48.0 | 3.75e-01 | 95.7% | 64.2% |
| 2e6zA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 36.0 | 3.89e-01 | 98.6% | 79.7% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.54 | 32.0 | 3.50e-01 | 75.4% | 72.7% |
| 3u4zA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 40.0 | 3.52e-01 | 87.0% | 75.2% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 41.0 | 4.24e-01 | 100.0% | 95.3% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 35.0 | 3.71e-01 | 97.1% | 86.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979564 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.71 | 42.0 | 4.36e-01 | 72.5% | 63.1% |
| 3982411 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.71 | 42.0 | 4.36e-01 | 72.5% | 63.1% |
| 4396411 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.70 | 50.0 | 3.97e-01 | 95.7% | 37.1% |
| 4132603 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.69 | 49.0 | 3.88e-01 | 95.7% | 35.9% |
| 4067155 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.69 | 49.0 | 3.97e-01 | 95.7% | 40.0% |
| 3211092 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.67 | 48.0 | 3.78e-01 | 95.7% | 35.9% |
| 3701510 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.67 | 47.0 | 3.75e-01 | 95.7% | 35.9% |
| 4397221 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.63 | 39.0 | 4.00e-01 | 73.9% | 66.2% |
| 3288884 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 41.0 | 3.61e-01 | 72.5% | 81.9% |
| 3708438 | 2006.1.6.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Sec23_trunk | 0.59 | 51.0 | 3.48e-01 | 100.0% | 47.5% |
| 3749631 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.58 | 37.0 | 3.19e-01 | 76.8% | 41.0% |
| 3927894 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 43.0 | 3.44e-01 | 78.3% | 65.9% |
| 4087245 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.58 | 50.0 | 4.02e-01 | 95.7% | 69.6% |
| 2388493 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.58 | 37.0 | 3.86e-01 | 94.2% | 68.8% |
| 3970612 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.58 | 50.0 | 3.97e-01 | 95.7% | 64.3% |
| 3280385 | 4.8.1.5 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR | 0.58 | 35.0 | 3.82e-01 | 100.0% | 74.5% |
| 5004174 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.58 | 39.0 | 3.26e-01 | 71.0% | 50.4% |
| 5057633 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.58 | 49.0 | 4.19e-01 | 95.7% | 74.8% |
| 5083091 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.57 | 48.0 | 4.09e-01 | 95.7% | 73.0% |
| 4338934 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 38.0 | 3.94e-01 | 71.0% | 75.4% |
| 4965852 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.56 | 39.0 | 3.72e-01 | 72.5% | 83.7% |
| 4261934 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.56 | 43.0 | 3.81e-01 | 85.5% | 78.1% |
| 4086268 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.56 | 38.0 | 3.50e-01 | 71.0% | 64.4% |
| 3618504 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.54 | 37.0 | 3.91e-01 | 76.8% | 83.3% |
| 4936051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 38.0 | 4.16e-01 | 75.4% | 96.4% |
| 4546532 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.53 | 41.0 | 3.66e-01 | 85.5% | 77.1% |
| 4003728 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 36.0 | 2.45e-01 | 84.1% | 17.8% |
| 3821429 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.53 | 41.0 | 3.21e-01 | 85.5% | 79.4% |
| 3642524 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.53 | 41.0 | 3.52e-01 | 89.9% | 70.4% |
| 5018514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 46.0 | 3.73e-01 | 100.0% | 75.6% |
| 5041307 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 44.0 | 3.04e-01 | 97.1% | 93.8% |
| 3223140 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.52 | 45.0 | 3.81e-01 | 100.0% | 72.5% |
| 3518991 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.51 | 42.0 | 4.18e-01 | 98.6% | 86.7% |
| 5035742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 37.0 | 3.91e-01 | 79.7% | 96.7% |