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MK448999.1__QBX31463.1__Javan638_0046__00046
Bact-VirMK448999.1__QBX31463.1__Javan638_0046__00046
Identity
- Accession:
- MK448999 ↗
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 114-253
Domain cluster:
rep: IMGVR_UViG_2728369544_000003-2728369544-2730776412__D316-388_478-527
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13408.13 best | Zn_ribbon_recom | 38.8 | 1.30e-09 | 45.0% | 94.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.55 | 22.0 | 2.96e-01 | 77.9% | 69.0% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.54 | 24.0 | 2.96e-01 | 96.4% | 63.2% |
| 2vh2A02 | 3.40.50.11690 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cell division protein FtsQ/DivIB | 0.52 | 32.0 | 3.30e-01 | 96.4% | 64.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1144772 | 375.1.9.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Zn_ribbon_recom | 0.65 | 59.0 | 5.28e-01 | 96.4% | 97.3% |
| 3659174 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.60 | 35.0 | 3.98e-01 | 92.1% | 78.0% |
| 3492201 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.58 | 28.0 | 3.65e-01 | 94.3% | 82.7% |
| 3929357 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.55 | 28.0 | 3.49e-01 | 88.6% | 79.8% |
| 3965976 | 809.1.1.1 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA | 0.54 | 25.0 | 2.92e-01 | 96.4% | 59.6% |
| 4145939 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.54 | 29.0 | 3.68e-01 | 89.3% | 97.1% |
| 5071733 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.54 | 26.0 | 3.16e-01 | 90.7% | 67.8% |
| 3669786 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.54 | 21.0 | 3.29e-01 | 87.1% | 96.0% |
| 4945290 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.50 | 24.0 | 3.28e-01 | 81.4% | 98.3% |
D2
medium
residues 6-77
Domain cluster:
representative