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MK449003.1__QBX31664.1__Javan648_0038__00027

Bact-Vir

MK449003.1__QBX31664.1__Javan648_0038__00027

Identity

Accession:
MK449003 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aliceevansviridae› Streptococcus_phage_Javan648

TaxID: 2548299

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62
PDB
Domain cluster: rep: NC_055050.1__YP_010083949.1__KMD50_gp49__00049__D3-65
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 64.0 6.01e-01 98.2% 80.9%
1hnfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 43.0 3.81e-01 96.4% 49.4%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 45.0 3.44e-01 96.4% 32.6%
1ne6A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 45.0 3.45e-01 98.2% 35.2%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.61 52.0 4.60e-01 96.4% 98.8%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.82e-01 98.2% 53.8%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.60 50.0 4.45e-01 98.2% 100.0%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 46.0 3.90e-01 94.6% 96.2%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.06e-01 91.1% 59.1%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 41.0 3.19e-01 80.4% 56.4%
2hvwA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 45.0 3.39e-01 92.9% 78.2%
7mjrA04 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.55 44.0 3.71e-01 100.0% 53.3%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 43.0 3.44e-01 98.2% 43.2%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.52e-01 96.4% 50.5%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.53 43.0 3.44e-01 96.4% 45.8%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 36.0 3.55e-01 92.9% 65.6%
2oxgC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.29e-01 96.4% 47.5%
6grqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.50e-01 96.4% 55.7%
3cjrB01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.51 35.0 3.29e-01 73.2% 92.9%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.51 40.0 3.34e-01 96.4% 100.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.78 65.0 5.68e-01 92.9% 63.5%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.78 63.0 6.59e-01 91.1% 100.0%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.73 64.0 5.98e-01 98.2% 79.7%
5057289 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.72 41.0 4.81e-01 89.3% 88.6%
4965440 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.69 40.0 4.58e-01 91.1% 80.0%
3529267 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.69 39.0 4.58e-01 89.3% 88.6%
3967414 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 45.0 4.76e-01 100.0% 78.0%
3457416 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.64 42.0 4.12e-01 85.7% 63.3%
1016 714.1.1.1 ↗ beta sandwiches › N-utilization substance G protein NusG, insert domain › N-utilization substance G protein NusG, insert domain › N-utilization substance G protein NusG, insert domain › NusG_II 0.61 52.0 4.62e-01 96.4% 100.0%
3720958 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.60 40.0 4.26e-01 87.5% 78.0%
2796408 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 3.53e-01 94.6% 46.0%
1758716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.60 41.0 4.27e-01 85.7% 76.9%
5036761 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 42.0 2.83e-01 96.4% 20.5%
4943498 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 42.0 4.14e-01 96.4% 75.0%
4968660 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.54 44.0 3.62e-01 100.0% 92.5%
5050381 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.38e-01 96.4% 49.5%
4399120 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.51 40.0 3.64e-01 83.9% 85.3%
4948066 3781.1.1.2 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11 0.51 35.0 3.31e-01 73.2% 95.7%
3490102 11.1.1.230 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YBD 0.51 45.0 3.84e-01 100.0% 81.1%