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MK449003.1__QBX31679.1__Javan648_0053__00012

Bact-Vir

MK449003.1__QBX31679.1__Javan648_0053__00012

Identity

Accession:
MK449003 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-59
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wt7B00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.82 72.0 6.22e-01 96.6% 63.3%
1v64A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.68 59.0 4.83e-01 96.6% 57.4%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 52.0 4.61e-01 91.5% 90.8%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.56 50.0 3.70e-01 98.3% 60.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3242394 4215.1.1.0 alpha arrays › SOCS box-like › SOCS box-like › SOCS box-like 0.80 50.0 5.41e-01 71.2% 76.0%
3393532 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.63 55.0 3.58e-01 98.3% 26.8%
4017860 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.61 50.0 2.99e-01 96.6% 18.5%
3592580 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.58 43.0 4.37e-01 81.4% 80.0%
None 0.53 43.0 3.02e-01 100.0% 94.5%
D2 high residues 65-165
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10552.15 best ORF6C 23.4 6.40e-05 57.4% 28.1%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.68 50.0 5.34e-01 93.1% 90.6%
2a7oA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.66 55.0 5.59e-01 91.1% 92.0%
5b00A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.64 49.0 3.65e-01 97.0% 31.8%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.64 54.0 5.14e-01 96.0% 82.3%
4oogC01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.63 54.0 4.64e-01 94.1% 87.0%
7r97A01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.63 54.0 4.79e-01 96.0% 83.8%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.62 45.0 4.98e-01 97.0% 96.3%
2qvwA04 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.62 47.0 4.22e-01 82.2% 70.3%
2z15A00 3.90.640.90 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain 0.62 45.0 4.29e-01 93.1% 65.5%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 35.0 3.86e-01 91.1% 68.7%
1o0wA01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.60 51.0 4.43e-01 92.1% 83.1%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.60 45.0 3.38e-01 78.2% 43.8%
6e1kA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 41.0 4.03e-01 72.3% 93.8%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 43.0 4.02e-01 79.2% 60.9%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 36.0 3.90e-01 80.2% 72.4%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 47.0 3.79e-01 87.1% 86.9%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 38.0 3.69e-01 77.2% 60.2%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.57 44.0 4.41e-01 79.2% 79.2%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 36.0 3.95e-01 88.1% 78.3%
1jkwA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 45.0 3.80e-01 87.1% 96.0%
1yj8A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 46.0 4.02e-01 90.1% 96.8%
2qptA01 1.10.268.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › 0.56 48.0 4.22e-01 93.1% 77.4%
4od4A01 1.10.357.140 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase 0.55 49.0 4.19e-01 95.0% 93.6%
2q14B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 45.0 3.46e-01 89.1% 63.1%
1bh9B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 43.0 4.57e-01 85.1% 94.4%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 34.0 3.84e-01 72.3% 81.8%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.54 37.0 3.70e-01 84.2% 66.7%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.54 38.0 4.36e-01 79.2% 100.0%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 39.0 3.37e-01 74.3% 86.2%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 39.0 4.02e-01 80.2% 81.1%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.53 45.0 4.41e-01 93.1% 87.5%
3cymA03 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.53 33.0 3.53e-01 93.1% 71.6%
3gcgB00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.52 44.0 3.85e-01 92.1% 83.6%
5c0yA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.52 41.0 4.26e-01 84.2% 98.9%
4iu9B01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 40.0 3.21e-01 87.1% 42.0%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.51 41.0 3.65e-01 93.1% 84.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589701 632.24.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › ORF6C 0.81 60.0 6.54e-01 88.1% 91.8%
4059363 142.3.1.1 alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C 0.71 53.0 5.58e-01 88.1% 87.8%
3879341 142.3.1.2 alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › MTBP_C 0.69 51.0 5.60e-01 95.0% 97.5%
3788953 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.69 56.0 5.88e-01 94.1% 97.8%
5078780 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 50.0 5.11e-01 85.1% 82.1%
4963325 1111.1.1.1 alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Gly_transporter 0.63 49.0 3.97e-01 84.2% 68.5%
2088051 1111.1.1.1 alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Gly_transporter 0.63 45.0 3.63e-01 75.2% 92.0%
3740181 142.1.1.5 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.63 50.0 5.30e-01 97.0% 98.9%
3571483 60.1.1.16 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › MTBP_C 0.62 46.0 4.98e-01 94.1% 100.0%
3387918 207.9.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide_3 0.62 46.0 3.24e-01 93.1% 24.4%
4434200 142.1.1.5 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.62 51.0 4.96e-01 100.0% 82.7%
4237257 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.61 43.0 4.53e-01 79.2% 81.1%
2755231 148.1.3.28 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 0.61 49.0 3.96e-01 88.1% 72.5%
5023792 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.60 50.0 4.87e-01 89.1% 86.4%
3398607 1111.1.1.2 alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › TRIC 0.60 48.0 3.67e-01 88.1% 64.4%
3171735 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.60 41.0 4.30e-01 79.2% 75.8%
4982233 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.60 40.0 3.82e-01 90.1% 60.0%
3969505 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.59 43.0 4.39e-01 93.1% 81.1%
3589846 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.59 40.0 3.20e-01 70.3% 41.8%
4501940 1111.1.1.1 alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Gly_transporter 0.59 47.0 3.78e-01 87.1% 68.1%
3820964 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.59 37.0 2.79e-01 87.1% 26.1%
3387468 4953.1.1.2 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.59 32.0 3.55e-01 81.2% 66.3%
3959665 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.58 43.0 4.50e-01 78.2% 86.3%
3219809 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.57 44.0 4.32e-01 81.2% 80.9%
3968117 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.57 49.0 4.52e-01 97.0% 71.9%
3976621 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.57 47.0 4.62e-01 89.1% 89.1%
5030327 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.55 45.0 3.47e-01 89.1% 41.2%
3960588 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.55 49.0 4.06e-01 97.0% 61.1%
3192990 192.15.1.216 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF7719 0.55 44.0 3.77e-01 87.1% 64.8%
4943152 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.54 38.0 3.73e-01 79.2% 66.4%
5048247 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.54 40.0 4.03e-01 79.2% 78.0%
3282529 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.54 40.0 4.01e-01 79.2% 78.1%
4392843 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.54 48.0 3.40e-01 100.0% 93.8%
4928737 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.53 37.0 3.85e-01 93.1% 77.9%
3656969 5059.1.1.5 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.53 43.0 3.08e-01 90.1% 62.7%
3203017 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.53 37.0 3.73e-01 81.2% 70.5%
3953975 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.53 39.0 4.05e-01 78.2% 87.4%
3811231 5050.1.1.4 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran 0.53 42.0 3.51e-01 87.1% 51.7%
3949317 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.52 47.0 4.69e-01 100.0% 99.0%
3320842 3236.1.1.1 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.52 43.0 2.90e-01 91.1% 78.8%
3373039 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.51 46.0 4.43e-01 100.0% 100.0%
5081076 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 37.0 2.70e-01 76.2% 59.3%
5024162 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.51 36.0 3.54e-01 74.3% 86.4%
None 0.50 39.0 2.77e-01 82.2% 67.6%
3651471 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.50 42.0 3.13e-01 94.1% 44.6%
4082855 106.1.1.4 alpha arrays › Globin-like › Globin-like › Globin-like › Rsbr_N 0.50 39.0 3.53e-01 83.2% 87.9%
4339647 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.50 41.0 2.97e-01 89.1% 70.0%