←Back to structures
MK449003.1__QBX31688.1__Javan648_0062__00003
Bact-VirMK449003.1__QBX31688.1__Javan648_0062__00003
Identity
- Accession:
- MK449003 ↗
- Kingdom:
- phage
Quality
94.6
mean pLDDT
Taxonomy
TaxID: 2548299
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-151
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22398.2 best | DUF6978 | 104.2 | 9.60e-30 | 93.1% | 98.5% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vckA00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.54 | 46.0 | 4.09e-01 | 92.4% | 85.6% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 40.0 | 3.90e-01 | 88.9% | 71.2% |
| 3sy9C01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.54 | 40.0 | 2.99e-01 | 77.1% | 41.9% |
| 2durB01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.77e-01 | 88.2% | 86.5% |
| 3blcA00 | 2.70.98.90 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 41.0 | 3.38e-01 | 83.3% | 66.4% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 26.0 | 3.64e-01 | 78.5% | 97.2% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 28.0 | 3.75e-01 | 90.3% | 96.3% |
| 1z4vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 44.0 | 3.23e-01 | 96.5% | 95.7% |
| 3pu2B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 36.0 | 3.60e-01 | 90.3% | 68.6% |
| 2wjsA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.88e-01 | 88.2% | 97.8% |
| 5mc9A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.85e-01 | 87.5% | 96.2% |
| 2vt8A00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.50 | 37.0 | 3.79e-01 | 87.5% | 76.9% |
| 2y24A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 33.0 | 3.73e-01 | 84.0% | 88.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033429 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.67 | 27.0 | 3.62e-01 | 84.0% | 67.5% |
| 3574513 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.64 | 38.0 | 3.44e-01 | 75.0% | 43.1% |
| 3743289 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.63 | 37.0 | 4.24e-01 | 86.8% | 78.1% |
| 3737835 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.62 | 36.0 | 4.22e-01 | 86.8% | 81.0% |
| 2649512 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.59 | 36.0 | 3.28e-01 | 70.1% | 44.4% |
| 2145749 | 330.19.1.1 ↗ | a+b two layers › dsRBD-like › Anti-CRISPR protein Acr30-35/AcrF1 › Anti-CRISPR protein Acr30-35/AcrF1 › Acr30-35_AcrF1 | 0.59 | 29.0 | 3.68e-01 | 78.5% | 80.0% |
| 3217981 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.59 | 37.0 | 3.50e-01 | 94.4% | 52.4% |
| 4284296 | 12.3.1.22 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GH97_N | 0.56 | 45.0 | 3.72e-01 | 83.3% | 74.7% |
| 3238997 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 34.0 | 3.59e-01 | 70.1% | 68.4% |
| 346609 | 867.1.1.2 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red | 0.54 | 46.0 | 4.06e-01 | 92.4% | 85.4% |
| 3592054 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.54 | 43.0 | 3.63e-01 | 84.7% | 90.8% |
| 4806694 | 1033.1.1.3 ↗ | beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 | 0.53 | 37.0 | 3.17e-01 | 71.5% | 63.0% |
| 4027680 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.52 | 37.0 | 3.77e-01 | 86.1% | 72.4% |
| 3235233 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 45.0 | 3.34e-01 | 95.8% | 65.2% |
| 3394516 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.52 | 37.0 | 3.72e-01 | 86.8% | 72.9% |
| 3165950 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.51 | 40.0 | 3.27e-01 | 83.3% | 97.9% |
| 3233389 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.51 | 41.0 | 3.15e-01 | 91.0% | 97.6% |