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MK449004.1__QBX31730.1__Javan68_0040__00007

Bact-Vir

MK449004.1__QBX31730.1__Javan68_0040__00007

Identity

Accession:
MK449004 ↗
Kingdom:
phage

Quality

72.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan68

TaxID: 2548301

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-49
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 47.0 2.83e-01 77.6% 10.5%
1zboA02 1.10.4060.10 Mainly Alpha › Orthogonal Bundle › LON domain-like fold › BPP1347 like domain 0.68 56.0 4.67e-01 91.8% 100.0%
4yt2A02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.67 45.0 3.53e-01 71.4% 37.7%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.65 43.0 4.03e-01 81.6% 55.7%
6rzqA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.63 50.0 4.29e-01 91.8% 80.0%
1x2lA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 52.0 4.48e-01 98.0% 88.2%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.61 49.0 4.41e-01 95.9% 68.9%
7cyuA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 43.0 4.14e-01 77.6% 64.9%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 49.0 4.06e-01 98.0% 75.0%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.82e-01 100.0% 53.4%
8actF02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 40.0 3.80e-01 73.5% 68.3%
1kl9A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.58 48.0 4.01e-01 95.9% 76.1%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 40.0 3.85e-01 71.4% 62.5%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 45.0 3.77e-01 98.0% 70.5%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 40.0 3.52e-01 77.6% 46.8%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.46e-01 100.0% 46.3%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 46.0 3.89e-01 100.0% 100.0%
1t90A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 45.0 2.90e-01 100.0% 43.9%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 44.0 3.11e-01 91.8% 55.7%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.53 37.0 3.44e-01 73.5% 73.8%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.69e-01 83.7% 63.6%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 41.0 3.04e-01 100.0% 81.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3376179 328.7.1.0 ↗ a+b two layers › IF3-like › Smr domain › Smr domain 0.90 78.0 5.09e-01 100.0% 24.9%
3643488 192.15.1.11 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA 0.70 47.0 4.14e-01 71.4% 49.3%
4669270 6026.1.1.42 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › CemA 0.69 47.0 3.96e-01 71.4% 43.5%
5072420 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 40.0 4.01e-01 85.7% 58.0%
5055914 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 40.0 3.87e-01 85.7% 52.7%
5068679 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.69 40.0 3.86e-01 85.7% 52.7%
4569675 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.68 46.0 3.61e-01 71.4% 34.3%
5055912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 40.0 3.50e-01 85.7% 41.4%
3560411 148.1.3.336 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Glyco_hydro_15 0.66 52.0 3.43e-01 87.8% 34.3%
4960529 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.66 56.0 5.41e-01 98.0% 94.5%
5032601 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 40.0 3.90e-01 85.7% 56.4%
4941943 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.65 40.0 3.73e-01 85.7% 51.7%
4984666 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 40.0 3.40e-01 85.7% 41.3%
3864511 109.2.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 0.64 53.0 3.49e-01 91.8% 71.4%
4018714 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.61 48.0 4.34e-01 93.9% 85.3%
3996596 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.61 52.0 4.73e-01 100.0% 74.3%
3930564 109.4.1.89 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_FH3,Drf_GBD 0.61 50.0 2.97e-01 91.8% 11.9%
3507622 143.1.1.1 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABP 0.60 45.0 4.10e-01 89.8% 65.3%
3279510 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.60 45.0 4.32e-01 85.7% 98.3%
2843606 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.59 44.0 3.92e-01 89.8% 59.0%
4990358 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.59 45.0 3.94e-01 87.8% 83.7%
4979452 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 3.45e-01 79.6% 50.0%
5076741 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.58 39.0 3.93e-01 79.6% 70.0%
3227034 5069.1.3.65 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PF31020 0.57 44.0 3.66e-01 100.0% 64.3%
3258110 109.4.1.89 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_FH3,Drf_GBD 0.56 47.0 2.90e-01 100.0% 20.9%
5021339 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.56 44.0 3.28e-01 100.0% 83.6%
3727217 101.1.2.384 ↗ alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 0.56 42.0 4.26e-01 81.6% 82.0%
5012421 101.1.2.889 ↗ alpha arrays › HTH › HTH › winged helix domain › Arc_trans_TRASH 0.54 38.0 3.13e-01 77.6% 70.5%