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MK449004.1__QBX31732.1__Javan68_0042__00005

Bact-Vir

MK449004.1__QBX31732.1__Javan68_0042__00005

Identity

Accession:
MK449004 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan68

TaxID: 2548301

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-48
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.68 57.0 4.92e-01 100.0% 74.4%
6jgwA01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.67 58.0 4.33e-01 100.0% 38.8%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.53e-01 100.0% 67.1%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.87e-01 100.0% 66.7%
4rshA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 41.0 2.97e-01 93.5% 88.0%
3ie7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 41.0 2.62e-01 100.0% 73.1%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 44.0 3.74e-01 97.8% 70.5%
3eqvA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 37.0 2.67e-01 89.1% 81.8%
3rrwB01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.51 40.0 2.78e-01 93.5% 39.0%
1cqzB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 41.0 3.54e-01 97.8% 70.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965196 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.92 84.0 7.65e-01 100.0% 83.3%
3164271 101.1.9.136 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF29765 0.89 80.0 7.08e-01 100.0% 84.6%
3960483 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 65.0 6.39e-01 100.0% 92.0%
4191032 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.74 63.0 6.21e-01 100.0% 92.0%
3839973 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 56.0 5.23e-01 100.0% 81.7%
3286117 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.65 54.0 4.05e-01 100.0% 39.2%
3937359 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 51.0 4.03e-01 100.0% 56.0%
4390858 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.57 45.0 4.46e-01 100.0% 90.0%
3582590 3291.1.1.9 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2371 0.55 42.0 3.23e-01 89.1% 85.8%
3601902 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 43.0 2.95e-01 97.8% 88.1%
3613940 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 34.0 3.23e-01 73.9% 50.0%
3523709 5001.1.1.138 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PF30689 0.51 40.0 2.77e-01 91.3% 67.9%
4952959 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.50 42.0 3.77e-01 100.0% 77.1%