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MK449005.1__QBX31762.1__Javan74_0026__00027

Bact-Vir

MK449005.1__QBX31762.1__Javan74_0026__00027

Identity

Accession:
MK449005 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_Javan74

TaxID: 2548305

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-37_55-138
PDB
Domain cluster: rep: MZ417522.1__QXN67731.1__X__00014__D5-37_64-148
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF05263.18 best DUF722 43.9 3.70e-11 99.1% 72.6%
PF07638.18 Sigma70_ECF 22.0 1.80e-04 87.7% 32.4%
PF04545.23 Sigma70_r4 24.2 2.60e-05 45.6% 76.0%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 50.0 5.87e-01 80.7% 91.3%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 45.0 4.69e-01 97.4% 61.9%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 43.0 4.72e-01 96.5% 68.1%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.73 54.0 4.99e-01 100.0% 61.3%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 37.0 4.74e-01 95.6% 93.9%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 34.0 3.51e-01 93.9% 52.7%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 51.0 4.14e-01 92.1% 60.7%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 38.0 3.74e-01 88.6% 61.7%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.56 35.0 3.55e-01 93.9% 61.2%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 41.0 3.30e-01 78.1% 93.2%
1xwyA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.56 50.0 3.86e-01 100.0% 99.2%
3jcuZ00 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.55 31.0 3.77e-01 94.7% 98.4%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 40.0 3.85e-01 93.9% 65.9%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 34.0 3.72e-01 86.8% 76.6%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 44.0 3.92e-01 100.0% 60.8%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.53 43.0 3.72e-01 86.8% 78.3%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 42.0 3.38e-01 85.1% 95.3%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 33.0 3.48e-01 96.5% 67.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 35.0 3.64e-01 86.8% 72.8%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 37.0 3.37e-01 71.9% 82.6%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 36.0 3.79e-01 89.5% 76.4%
2c0uA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 40.0 3.57e-01 83.3% 77.5%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 38.0 3.49e-01 100.0% 58.7%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 38.0 3.06e-01 87.7% 41.3%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 33.0 3.42e-01 87.7% 68.9%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 39.0 3.61e-01 83.3% 88.4%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 34.0 3.33e-01 70.2% 98.4%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 71.0 7.29e-01 100.0% 92.7%
4570076 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.80 52.0 3.79e-01 77.2% 26.8%
4585396 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.80 52.0 4.55e-01 77.2% 46.9%
3974118 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 58.0 6.45e-01 100.0% 98.9%
4674817 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 50.0 4.27e-01 77.2% 42.9%
3578154 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 52.0 5.77e-01 84.2% 87.8%
4084282 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.76 49.0 5.61e-01 81.6% 87.1%
4033888 101.1.1.489 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF722 0.75 69.0 6.59e-01 98.2% 100.0%
3297365 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.74 48.0 4.19e-01 81.6% 44.4%
4518447 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 48.0 4.94e-01 80.7% 69.1%
3668669 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 48.0 5.44e-01 80.7% 88.2%
4056597 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.73 48.0 3.44e-01 81.6% 24.2%
3980765 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 48.0 4.21e-01 80.7% 46.7%
3303765 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.72 48.0 4.23e-01 80.7% 48.1%
3428775 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 3.41e-01 81.6% 24.4%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.70 46.0 4.10e-01 78.1% 47.5%
3339569 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.69 46.0 5.11e-01 78.1% 86.5%
4026959 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.67 45.0 3.18e-01 84.2% 23.3%
5023608 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.63 44.0 4.26e-01 72.8% 93.1%
4340199 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 56.0 5.21e-01 100.0% 82.8%
4955900 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 35.0 3.92e-01 86.0% 71.1%
3655226 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.59 37.0 3.49e-01 89.5% 52.6%
3701576 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.58 38.0 3.33e-01 87.7% 46.1%
54292 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.58 34.0 3.49e-01 96.5% 57.4%
3302992 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.57 38.0 3.24e-01 87.7% 41.6%
4612394 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 35.0 3.94e-01 83.3% 77.5%
3701878 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.57 38.0 3.26e-01 87.7% 44.0%
3787293 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 36.0 3.49e-01 89.5% 56.8%
3729348 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.56 37.0 3.26e-01 87.7% 45.3%
3718570 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.56 37.0 3.64e-01 87.7% 61.6%
3854274 5054.1.1.9 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PKD_channel 0.56 41.0 3.04e-01 77.2% 85.7%
3890040 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 35.0 3.30e-01 87.7% 51.4%
3650393 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 39.0 2.76e-01 91.2% 23.7%
3253586 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.55 37.0 3.39e-01 87.7% 53.1%
3708827 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 39.0 3.39e-01 87.7% 48.8%
5025027 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.54 34.0 3.37e-01 86.8% 57.6%
3224861 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 38.0 3.66e-01 97.4% 62.3%
4120848 101.1.1.310 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0137 0.54 36.0 3.25e-01 100.0% 47.5%
3193691 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.53 37.0 3.45e-01 71.9% 76.6%
3328518 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.53 39.0 3.26e-01 75.4% 89.2%
3816910 174.1.1.58 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › NEPRO_N 0.53 39.0 3.35e-01 78.1% 54.7%
3662896 101.1.1.411 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2 0.53 41.0 4.02e-01 83.3% 80.0%
3970616 601.4.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 0.51 36.0 3.40e-01 74.6% 86.9%