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MK449008.1__QBX31901.1__Javan84_0024__00035

Bact-Vir

MK449008.1__QBX31901.1__Javan84_0024__00035

Identity

Accession:
MK449008 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-95
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03592.22 best Terminase_2 42.4 1.50e-10 73.6% 37.8%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 35.0 4.41e-01 95.6% 80.4%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 36.0 3.22e-01 100.0% 36.7%
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.67 38.0 3.33e-01 73.6% 38.2%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.66 35.0 3.49e-01 98.9% 48.9%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.66 34.0 3.73e-01 100.0% 59.7%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.65 39.0 4.04e-01 78.0% 63.5%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 47.0 3.98e-01 76.9% 58.4%
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 50.0 4.71e-01 93.4% 70.8%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.62 37.0 3.20e-01 100.0% 37.8%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 36.0 4.03e-01 100.0% 74.6%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.61 36.0 2.86e-01 100.0% 28.3%
4yjwA00 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.60 36.0 3.01e-01 100.0% 35.3%
3q2eA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 53.0 5.02e-01 100.0% 100.0%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 35.0 3.38e-01 100.0% 52.5%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 42.0 3.36e-01 75.8% 86.3%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 37.0 3.85e-01 100.0% 69.4%
4nwpD00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.57 50.0 4.30e-01 100.0% 72.5%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.54e-01 87.9% 95.5%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.56 48.0 4.91e-01 100.0% 96.7%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 40.0 3.75e-01 74.7% 86.4%
1wu3I00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 48.0 4.03e-01 97.8% 70.2%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 40.0 3.87e-01 75.8% 92.2%
3s84A02 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.55 39.0 3.25e-01 100.0% 42.7%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.55 34.0 3.57e-01 98.9% 68.3%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.55 43.0 4.10e-01 82.4% 92.4%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 46.0 4.74e-01 100.0% 98.9%
1wolA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.55 39.0 3.62e-01 75.8% 77.0%
1at9A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 48.0 3.61e-01 98.9% 56.1%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 39.0 3.53e-01 76.9% 73.4%
3tedA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 42.0 4.05e-01 85.7% 79.0%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 39.0 3.51e-01 76.9% 93.8%
4cfsA02 1.10.210.20 Mainly Alpha › Orthogonal Bundle › Uteroglobin › 0.54 31.0 3.37e-01 93.4% 70.0%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 37.0 4.08e-01 100.0% 89.2%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.53 44.0 4.16e-01 94.5% 78.1%
1nzeA00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.53 37.0 3.45e-01 72.5% 69.6%
7twaC00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.52 45.0 3.51e-01 100.0% 79.2%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.54e-01 79.1% 75.6%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 46.0 3.90e-01 100.0% 59.7%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.52 45.0 3.09e-01 96.7% 83.4%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 46.0 4.08e-01 100.0% 70.2%
4gycA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 46.0 3.50e-01 100.0% 57.7%
7e4gA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 46.0 3.62e-01 100.0% 58.4%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 3.72e-01 78.0% 87.8%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.51 42.0 3.58e-01 92.3% 92.3%
7yu4A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 39.0 2.94e-01 85.7% 86.8%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.81e-01 97.8% 72.2%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 44.0 3.63e-01 98.9% 70.9%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.50 38.0 3.41e-01 79.1% 66.7%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.50 32.0 3.37e-01 81.3% 71.1%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 43.0 3.85e-01 97.8% 80.7%
4hd1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 42.0 3.06e-01 93.4% 89.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4329562 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.72 45.0 4.12e-01 95.6% 49.6%
3698450 611.7.1.17 alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › DUF7708 0.69 37.0 2.78e-01 100.0% 20.9%
4020908 180.1.1.0 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase 0.64 57.0 4.73e-01 100.0% 58.7%
4963908 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.58 37.0 3.17e-01 100.0% 39.9%
4473674 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 35.0 3.28e-01 100.0% 48.2%
3946248 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 47.0 4.63e-01 90.1% 86.0%
3213941 5001.1.1.45 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sra 0.56 45.0 3.25e-01 91.2% 86.6%
3734369 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 40.0 2.75e-01 74.7% 38.7%
3673586 109.4.1.224 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_CAF1_bind 0.56 45.0 3.74e-01 90.1% 97.1%
3530378 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 40.0 3.32e-01 74.7% 72.3%
3987380 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.55 39.0 3.52e-01 75.8% 62.2%
3266118 603.1.1.100 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.55 39.0 3.57e-01 75.8% 75.2%
3843153 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.55 47.0 4.15e-01 95.6% 90.4%
5047422 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.55 40.0 3.84e-01 76.9% 88.6%
3802836 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.54 46.0 3.70e-01 92.3% 73.7%
4943286 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.54 47.0 4.10e-01 100.0% 80.4%
5047089 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.54 40.0 3.78e-01 78.0% 80.9%
3505729 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 38.0 3.67e-01 73.6% 87.0%
3668856 604.5.1.7 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT 0.53 41.0 3.87e-01 83.5% 93.0%
4979643 606.1.1.1 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop 0.53 46.0 4.12e-01 96.7% 79.2%
3348350 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.53 46.0 3.84e-01 100.0% 68.2%
3503335 604.1.1.124 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.53 36.0 3.34e-01 100.0% 54.8%
3406416 601.11.1.5 alpha bundles › Four-helical up-and-down bundle › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › PF27107 0.53 39.0 3.38e-01 78.0% 69.7%
3499662 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.53 45.0 4.03e-01 95.6% 92.6%
3315414 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.53 40.0 3.22e-01 80.2% 92.8%
3872220 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 38.0 3.59e-01 74.7% 90.9%
4960856 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 38.0 3.05e-01 76.9% 80.0%
5021586 3558.1.1.4 alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain › T1RH-like_C 0.53 38.0 3.35e-01 74.7% 69.2%
5005528 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.52 35.0 3.42e-01 100.0% 62.0%
3265125 604.22.1.1 alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain › TBCC_N 0.52 38.0 3.44e-01 75.8% 68.8%
3497911 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 43.0 3.82e-01 92.3% 89.6%
3458146 5059.1.1.8 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA 0.52 45.0 4.06e-01 98.9% 96.9%
4941521 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.52 37.0 3.74e-01 75.8% 93.7%
3624023 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.52 44.0 3.97e-01 95.6% 90.0%
4939615 3558.1.1.0 alpha arrays › HSDR subunit helical domain › HSDR subunit helical domain › HSDR subunit helical domain 0.52 42.0 3.68e-01 87.9% 78.5%
3301847 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.51 36.0 3.56e-01 74.7% 86.0%
3899959 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 37.0 3.57e-01 75.8% 96.2%
4944449 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.51 43.0 3.64e-01 96.7% 81.2%
3290817 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.51 38.0 3.28e-01 78.0% 65.7%
3406218 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.51 37.0 3.48e-01 74.7% 100.0%
3438770 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.51 42.0 3.47e-01 90.1% 83.6%
3326634 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.51 44.0 3.63e-01 100.0% 65.1%
3731006 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 36.0 3.64e-01 75.8% 97.9%
3970616 601.4.1.3 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 0.50 35.0 3.06e-01 73.6% 59.3%
3938350 604.1.1.67 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_5 0.50 36.0 3.49e-01 75.8% 92.4%
3972329 633.5.1.0 alpha bundles › Bromodomain-like › LemA-like › LemA-like 0.50 44.0 3.67e-01 100.0% 66.7%
D2 medium residues 99-176
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.84 48.0 3.42e-01 84.6% 21.6%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 52.0 4.26e-01 89.7% 40.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.72 31.0 2.90e-01 75.6% 33.7%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.69 61.0 5.46e-01 100.0% 70.8%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 59.0 5.22e-01 100.0% 69.7%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 58.0 4.67e-01 100.0% 83.1%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 30.0 2.85e-01 71.8% 36.0%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 47.0 3.27e-01 87.2% 26.8%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 39.0 3.52e-01 71.8% 48.1%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 3.75e-01 74.4% 83.3%
1rh5A00 1.10.3370.10 Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain 0.61 45.0 2.83e-01 79.5% 14.6%
1zodA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 33.0 2.67e-01 75.6% 29.1%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.13e-01 85.9% 90.8%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.59 38.0 3.69e-01 79.5% 60.0%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.90e-01 84.6% 72.4%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 37.0 3.44e-01 74.4% 53.1%
3v3kD00 1.20.1260.90 Mainly Alpha › Up-down Bundle › Ferritin › 0.57 43.0 3.38e-01 85.9% 38.4%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.43e-01 73.1% 86.1%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 47.0 4.11e-01 98.7% 75.4%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.55 23.0 2.38e-01 76.9% 32.0%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 36.0 2.95e-01 85.9% 36.2%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.57e-01 85.9% 76.1%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.42e-01 84.6% 66.7%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.53 43.0 3.68e-01 85.9% 58.5%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 38.0 3.61e-01 79.5% 63.8%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 39.0 2.94e-01 80.8% 86.4%
2ctkA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 42.0 3.85e-01 92.3% 67.3%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.73e-01 84.6% 99.0%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 39.0 3.63e-01 80.8% 67.4%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.51 42.0 3.58e-01 89.7% 57.6%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.50 38.0 2.64e-01 80.8% 80.1%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036589 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.92 53.0 4.24e-01 75.6% 34.1%
4934732 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.83 52.0 4.35e-01 85.9% 40.8%
4403516 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.80 53.0 4.49e-01 91.0% 42.7%
3755628 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.78 52.0 3.54e-01 96.2% 20.0%
3709607 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.72 66.0 4.99e-01 100.0% 75.4%
3817420 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.71 66.0 4.96e-01 100.0% 74.9%
4027270 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 44.0 3.07e-01 79.5% 20.4%
5069467 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 61.0 4.99e-01 100.0% 78.6%
3398317 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 61.0 4.81e-01 98.7% 84.4%
4026519 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.68 45.0 3.77e-01 91.0% 39.3%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 53.0 4.34e-01 80.8% 51.5%
4978893 3755.3.1.632 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin 0.68 62.0 5.07e-01 100.0% 70.7%
3165338 2484.1.1.32 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C 0.67 43.0 3.04e-01 75.6% 23.7%
5019432 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.67 56.0 4.61e-01 88.5% 87.7%
3802135 192.29.1.27 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1218 0.66 53.0 4.21e-01 88.5% 92.7%
3896368 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 60.0 4.80e-01 100.0% 91.9%
3173926 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 56.0 4.28e-01 93.6% 87.2%
5035139 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 59.0 4.88e-01 100.0% 84.2%
3238753 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 59.0 4.55e-01 100.0% 66.9%
3491256 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 59.0 4.52e-01 100.0% 56.6%
4303742 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 58.0 5.02e-01 98.7% 84.2%
4410759 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 58.0 5.05e-01 100.0% 66.1%
4942548 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 3.93e-01 93.6% 42.0%
4626792 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 53.0 4.33e-01 89.7% 82.8%
4941487 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 58.0 4.98e-01 98.7% 84.2%
3990696 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 56.0 4.17e-01 97.4% 61.0%
3229643 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 58.0 5.01e-01 100.0% 65.8%
3261408 109.4.1.404 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1 0.63 44.0 2.72e-01 71.8% 14.5%
4485921 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 56.0 4.87e-01 98.7% 84.2%
5048161 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 56.0 4.63e-01 100.0% 76.4%
3515407 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 55.0 4.34e-01 100.0% 75.0%
3594109 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 55.0 4.47e-01 100.0% 73.3%
5080131 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.62 49.0 4.18e-01 83.3% 84.2%
4025655 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 52.0 4.89e-01 94.9% 75.8%
3457354 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 56.0 4.54e-01 100.0% 75.9%
5005582 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 48.0 4.10e-01 82.1% 84.2%
4993906 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 53.0 4.42e-01 98.7% 85.7%
4942428 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 53.0 4.44e-01 97.4% 84.4%
4281419 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 53.0 4.44e-01 100.0% 77.5%
4981980 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 54.0 4.75e-01 100.0% 67.8%
5062471 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 52.0 4.74e-01 100.0% 76.4%
5000514 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.60 40.0 3.82e-01 83.3% 60.2%
4945806 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.60 53.0 4.57e-01 98.7% 80.8%
5054049 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 49.0 4.29e-01 88.5% 86.1%
4943420 3501.1.1.2 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 0.60 38.0 4.04e-01 80.8% 72.9%
5027042 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.60 38.0 3.66e-01 74.4% 58.0%
3637642 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 42.0 3.72e-01 79.5% 53.6%
3587631 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.57 40.0 3.33e-01 79.5% 40.7%
4982081 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.57 40.0 3.48e-01 73.1% 81.7%
4976807 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.56 44.0 3.66e-01 80.8% 80.8%
3602715 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.56 43.0 3.64e-01 80.8% 79.2%
164542 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 39.0 3.43e-01 73.1% 86.1%
5031648 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 45.0 3.45e-01 84.6% 80.0%
3532258 327.11.2.4 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › MOEP19 0.56 44.0 4.09e-01 83.3% 77.9%
4023956 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.55 44.0 3.72e-01 85.9% 52.3%
5031564 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.55 38.0 3.62e-01 78.2% 60.2%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.55 47.0 3.35e-01 93.6% 32.9%
5077859 2002.1.1.12 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.54 42.0 2.88e-01 84.6% 31.2%
3939904 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 2.80e-01 94.9% 13.5%
4994641 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.53 38.0 3.55e-01 78.2% 61.1%
3724623 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 47.0 2.91e-01 100.0% 52.5%
5048300 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 33.0 2.99e-01 73.1% 48.6%
4976773 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.52 35.0 3.22e-01 71.8% 74.5%
4003644 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 35.0 2.67e-01 70.5% 77.7%
4316518 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.51 36.0 3.42e-01 78.2% 63.3%
5035888 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.51 35.0 3.48e-01 73.1% 72.9%
3795151 304.8.1.71 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7636 0.50 27.0 2.52e-01 73.1% 37.0%