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MK450433.1__QAX95038.1__SEA_SEBASTISAURUS_50__00050
Bact-VirMK450433.1__QAX95038.1__SEA_SEBASTISAURUS_50__00050
Identity
- Accession:
- MK450433 ↗
- Kingdom:
- phage
Quality
72.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Colingsworthviridae›
Sebastisaurusvirus›
Streptomyces_phage_Sebastisaurus
TaxID: 2510572
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-71
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.86 | 56.0 | 6.25e-01 | 81.7% | 85.1% |
| 4k7bA00 | 1.20.120.1740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like | 0.85 | 57.0 | 4.53e-01 | 70.0% | 75.7% |
| 3htmA02 | 6.10.250.3030 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.84 | 46.0 | 5.55e-01 | 80.0% | 82.5% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.84 | 61.0 | 6.90e-01 | 85.0% | 100.0% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.79 | 55.0 | 5.46e-01 | 73.3% | 92.2% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.78 | 47.0 | 4.95e-01 | 81.7% | 67.3% |
| 4fymF00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.77 | 65.0 | 4.34e-01 | 90.0% | 33.5% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.76 | 61.0 | 4.60e-01 | 85.0% | 54.5% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.75 | 59.0 | 5.51e-01 | 85.0% | 74.3% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.74 | 65.0 | 5.62e-01 | 98.3% | 63.0% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.74 | 63.0 | 5.63e-01 | 93.3% | 72.0% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.73 | 55.0 | 5.86e-01 | 85.0% | 92.3% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.73 | 62.0 | 5.50e-01 | 93.3% | 69.8% |
| 4g09A03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 45.0 | 4.72e-01 | 81.7% | 69.1% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 48.0 | 5.38e-01 | 76.7% | 97.7% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 51.0 | 5.03e-01 | 86.7% | 71.4% |
| 3w0oA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.70 | 61.0 | 4.06e-01 | 95.0% | 32.0% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.69 | 64.0 | 5.04e-01 | 100.0% | 56.9% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.69 | 60.0 | 5.40e-01 | 96.7% | 80.7% |
| 2hkeA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.69 | 55.0 | 3.83e-01 | 88.3% | 43.4% |
| 2gz6A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.69 | 62.0 | 3.76e-01 | 100.0% | 33.1% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.69 | 63.0 | 4.85e-01 | 100.0% | 51.6% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.68 | 51.0 | 3.88e-01 | 80.0% | 33.8% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.67 | 54.0 | 5.33e-01 | 88.3% | 82.8% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 54.0 | 4.52e-01 | 96.7% | 77.7% |
| 3sp1A02 | 1.20.120.1910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain | 0.63 | 51.0 | 3.82e-01 | 88.3% | 82.1% |
| 2v8iA01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.60 | 52.0 | 3.17e-01 | 100.0% | 31.1% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.53 | 42.0 | 3.43e-01 | 91.7% | 72.8% |
| 2ffjA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.52 | 34.0 | 3.36e-01 | 70.0% | 63.1% |
| 7og5F01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.51 | 43.0 | 3.23e-01 | 93.3% | 75.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930198 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.81 | 65.0 | 6.60e-01 | 85.0% | 85.0% |
| 3262528 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.78 | 63.0 | 5.64e-01 | 88.3% | 63.7% |
| 1165097 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.78 | 65.0 | 4.88e-01 | 90.0% | 51.5% |
| 3806239 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.76 | 62.0 | 5.78e-01 | 91.7% | 70.7% |
| 3845790 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.76 | 63.0 | 5.20e-01 | 88.3% | 61.0% |
| 4016845 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.74 | 66.0 | 5.74e-01 | 98.3% | 82.2% |
| 4023890 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.74 | 65.0 | 5.90e-01 | 96.7% | 86.1% |
| 4512685 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.73 | 64.0 | 5.05e-01 | 95.0% | 61.7% |
| 3959176 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.73 | 62.0 | 4.77e-01 | 93.3% | 51.5% |
| 3716413 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 65.0 | 4.41e-01 | 96.7% | 53.8% |
| 3560308 | 515.1.1.0 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain | 0.71 | 62.0 | 4.88e-01 | 93.3% | 65.2% |
| 3280288 | 5011.1.1.0 ↗ | extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa | 0.69 | 49.0 | 5.43e-01 | 85.0% | 100.0% |
| 5043430 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.68 | 59.0 | 5.46e-01 | 96.7% | 84.0% |
| 3712851 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 60.0 | 4.11e-01 | 100.0% | 42.4% |
| 3602498 | 604.17.1.1 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › DUF447_C | 0.65 | 49.0 | 4.99e-01 | 83.3% | 83.3% |
| 3480037 | 129.1.1.3 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › UDPG_MGDP_dh | 0.65 | 54.0 | 4.91e-01 | 91.7% | 100.0% |
| 2842267 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.65 | 55.0 | 3.26e-01 | 96.7% | 62.7% |
| 3782801 | 109.4.1.262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG4_C | 0.64 | 54.0 | 3.64e-01 | 100.0% | 54.3% |
| 4028436 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.61 | 47.0 | 3.08e-01 | 83.3% | 66.3% |
| 1518765 | 7523.1.1.30 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 | 0.55 | 46.0 | 3.75e-01 | 98.3% | 48.0% |