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MK473373.2__QBJ04457.1__X__00116

Bact-Vir

MK473373.2__QBJ04457.1__X__00116

Identity

Accession:
MK473373 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lanavirus› Pseudomonas_phage_Lana

TaxID: 2530172

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a0bA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.62 43.0 3.58e-01 73.4% 95.8%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.62 52.0 3.99e-01 100.0% 61.4%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 44.0 3.55e-01 78.1% 87.7%
6d5xA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.59 40.0 3.19e-01 73.4% 88.1%
1tf5A04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.56 40.0 3.06e-01 81.2% 56.6%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.55 43.0 4.38e-01 84.4% 95.1%
7lvzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 2.77e-01 78.1% 28.1%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.54 43.0 3.91e-01 90.6% 75.3%
2kjfA00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.52 38.0 3.90e-01 82.8% 85.0%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 38.0 3.79e-01 81.2% 80.9%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.51 34.0 3.09e-01 70.3% 45.5%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.51 38.0 3.52e-01 81.2% 66.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3264507 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.65 44.0 4.21e-01 70.3% 73.3%
3298618 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 37.0 3.14e-01 76.6% 34.3%
3784779 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.62 47.0 4.53e-01 82.8% 86.7%
3406826 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.62 48.0 4.18e-01 84.4% 70.0%
5067264 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.60 46.0 3.87e-01 87.5% 62.5%
3870171 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.59 47.0 4.56e-01 89.1% 95.7%
3998355 190.1.1.25 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 0.57 44.0 4.31e-01 84.4% 94.3%
3784778 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 42.0 4.02e-01 82.8% 80.0%
3510564 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.55 40.0 3.51e-01 79.7% 54.4%
3999246 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.54 38.0 3.37e-01 76.6% 87.6%
3738224 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.51 39.0 3.71e-01 85.9% 82.5%
3730112 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.51 38.0 3.00e-01 84.4% 45.0%