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MK473373.2__QBJ04463.1__X__00110

Bact-Vir

MK473373.2__QBJ04463.1__X__00110

Identity

Accession:
MK473373 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-78
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 64.0 6.78e-01 83.9% 97.9%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.80 62.0 5.76e-01 85.7% 66.2%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.79 64.0 5.75e-01 87.5% 64.9%
4nleA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.79 56.0 5.06e-01 75.0% 57.9%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 61.0 6.36e-01 85.7% 96.0%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.77 54.0 3.43e-01 75.0% 85.6%
1ci4A00 1.10.150.40 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF 0.76 60.0 5.22e-01 87.5% 63.6%
1sgmA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.73 65.0 4.51e-01 100.0% 50.5%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.73 50.0 4.74e-01 94.6% 61.5%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.72 61.0 4.84e-01 98.2% 49.2%
6g94A00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.72 53.0 3.76e-01 80.4% 39.0%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.44e-01 82.1% 45.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 52.0 4.65e-01 78.6% 56.4%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 60.0 4.96e-01 100.0% 62.5%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 52.0 3.69e-01 80.4% 30.7%
8h6qD01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.70 53.0 3.35e-01 85.7% 34.5%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.69 51.0 4.92e-01 92.9% 68.8%
4fjqA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.68 57.0 3.48e-01 92.9% 27.9%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 52.0 5.05e-01 94.6% 74.2%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 52.0 5.16e-01 94.6% 79.3%
2wdqD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.68 50.0 4.16e-01 82.1% 48.6%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.67 56.0 4.46e-01 100.0% 46.4%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 59.0 4.72e-01 100.0% 60.7%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.67 52.0 4.39e-01 94.6% 50.5%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.66 49.0 4.58e-01 85.7% 63.4%
5nx5B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 52.0 3.38e-01 91.1% 36.3%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.66 50.0 3.14e-01 82.1% 66.7%
3nkuA00 1.10.357.170 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.66 49.0 3.53e-01 82.1% 27.8%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.66 46.0 4.86e-01 78.6% 83.7%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.64 51.0 4.34e-01 85.7% 72.2%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.64 51.0 4.39e-01 85.7% 64.0%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 48.0 4.31e-01 87.5% 57.7%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.64 52.0 4.58e-01 94.6% 61.7%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 47.0 4.11e-01 87.5% 57.6%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.63 55.0 3.66e-01 100.0% 38.3%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.63 51.0 3.66e-01 94.6% 90.4%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.62 42.0 3.91e-01 71.4% 60.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.62 53.0 4.25e-01 92.9% 54.7%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.62 47.0 3.89e-01 85.7% 45.5%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 54.0 4.94e-01 98.2% 95.9%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.61 53.0 4.25e-01 94.6% 55.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 50.0 4.76e-01 94.6% 79.1%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.60 44.0 4.21e-01 85.7% 78.6%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.59 46.0 3.84e-01 85.7% 66.7%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 51.0 3.92e-01 100.0% 94.0%
5tqbB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 52.0 3.18e-01 98.2% 23.8%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 43.0 3.98e-01 82.1% 60.8%
7watB02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 51.0 3.18e-01 100.0% 53.8%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 46.0 4.26e-01 89.3% 93.2%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.57 51.0 4.18e-01 98.2% 85.9%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.57 47.0 4.16e-01 96.4% 90.9%
4hteA02 1.20.58.1740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 45.0 3.56e-01 98.2% 41.9%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 42.0 3.44e-01 87.5% 87.8%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.56 43.0 3.59e-01 94.6% 86.0%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.54 41.0 3.29e-01 87.5% 42.0%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.53 38.0 3.23e-01 78.6% 83.7%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 39.0 3.23e-01 87.5% 87.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043409 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.88 66.0 7.23e-01 82.1% 100.0%
4983508 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.87 70.0 6.43e-01 85.7% 91.4%
5058272 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.83 62.0 6.71e-01 87.5% 100.0%
4167193 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.82 59.0 6.44e-01 76.8% 97.8%
3344802 6158.1.1.0 alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.79 58.0 5.56e-01 78.6% 69.2%
3293154 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.79 63.0 6.23e-01 87.5% 83.3%
3312794 101.1.3.22 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › A_thal_3526 0.78 62.0 5.67e-01 87.5% 66.7%
3996384 3455.1.1.7 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › COMM_HN 0.78 62.0 6.25e-01 87.5% 94.5%
3829115 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.77 63.0 6.00e-01 89.3% 81.5%
3814458 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.76 61.0 5.48e-01 89.3% 66.3%
3341091 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.75 61.0 5.85e-01 89.3% 93.8%
3334461 101.1.1.270 alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.75 60.0 5.48e-01 89.3% 69.3%
5035909 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.75 51.0 3.52e-01 71.4% 25.3%
3425939 101.1.2.472 alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.75 60.0 5.23e-01 89.3% 61.2%
3010699 3276.1.1.0 alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor 0.73 62.0 6.10e-01 98.2% 95.1%
3784055 192.24.1.0 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.73 56.0 4.21e-01 82.1% 40.0%
3355246 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.73 53.0 4.67e-01 94.6% 53.8%
4556778 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.73 60.0 4.81e-01 94.6% 81.7%
147067 3276.1.1.1 alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › MogR_DNAbind 0.72 61.0 5.94e-01 98.2% 93.8%
5046309 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.72 57.0 4.85e-01 89.3% 53.7%
3491670 614.1.1.0 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.71 50.0 5.06e-01 82.1% 76.4%
3917547 219.1.1.79 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.70 50.0 3.06e-01 75.0% 12.5%
4353 605.4.1.1 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › Rop 0.70 52.0 5.12e-01 87.5% 74.6%
3535346 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.68 54.0 3.13e-01 94.6% 10.6%
3878661 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 53.0 4.88e-01 87.5% 67.1%
3787963 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 47.0 4.59e-01 78.6% 66.2%
3396827 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.67 54.0 4.47e-01 94.6% 95.5%
3619662 192.12.1.3 alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 0.66 53.0 4.66e-01 92.9% 60.0%
4424778 605.2.1.3 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N 0.66 51.0 4.08e-01 92.9% 42.7%
4992268 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.65 57.0 3.68e-01 100.0% 27.3%
4940281 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.63 47.0 4.49e-01 87.5% 69.2%
4941676 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 50.0 3.52e-01 87.5% 95.4%
3497897 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.61 53.0 4.94e-01 94.6% 84.3%
4946087 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.61 51.0 4.05e-01 98.2% 78.4%
4647871 109.4.1.1498 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ATP13, PF30078 0.60 51.0 3.17e-01 100.0% 23.3%
4995713 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 4.08e-01 91.1% 55.8%
5001590 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 48.0 4.88e-01 91.1% 92.7%
3699443 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 49.0 3.88e-01 94.6% 68.7%
3181966 509.1.1.13 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 0.57 45.0 4.19e-01 91.1% 72.0%
5070237 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 49.0 4.26e-01 100.0% 95.6%