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MK473373.2__QBJ04464.1__X__00109

Bact-Vir

MK473373.2__QBJ04464.1__X__00109

Identity

Accession:
MK473373 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lanavirus› Pseudomonas_phage_Lana

TaxID: 2530172

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-82
PDB
Domain cluster: rep: MN536026.1__QIG56919.1__vBPaeSS2019XI_041__00041__D4-70
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26833.1 best Phage_Mu_gp6 29.7 7.20e-07 97.0% 52.9%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d2fA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 41.0 3.61e-01 86.4% 44.1%
4omfA00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.62 48.0 3.03e-01 86.4% 77.7%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.59 44.0 4.43e-01 97.0% 78.3%
2qxlB05 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.57 44.0 3.62e-01 86.4% 74.0%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.55 39.0 3.21e-01 78.8% 38.8%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.85e-01 80.3% 93.0%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.92e-01 95.5% 40.3%
1mwsA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 2.84e-01 98.5% 74.6%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 43.0 3.04e-01 90.9% 75.6%
4a9cA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 37.0 2.53e-01 78.8% 52.6%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.78e-01 97.0% 42.7%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.32e-01 74.2% 80.7%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 43.0 3.28e-01 95.5% 76.7%
5l2pA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.74e-01 95.5% 35.6%
1avwB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 35.0 2.72e-01 72.7% 68.4%
3ktnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 44.0 2.81e-01 100.0% 19.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956278 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 56.0 6.21e-01 84.8% 96.0%
5048387 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.74 58.0 6.02e-01 84.8% 100.0%
3310464 375.1.1.69 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.71 51.0 5.67e-01 78.8% 100.0%
5045117 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 51.0 5.25e-01 81.8% 98.3%
3352340 375.1.1.210 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF30904 0.65 49.0 5.29e-01 86.4% 98.2%
4950582 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.64 52.0 4.17e-01 89.4% 66.9%
4944757 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 42.0 4.59e-01 71.2% 100.0%
5051542 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 53.0 3.93e-01 100.0% 62.6%
None — 0.60 50.0 3.55e-01 97.0% 92.4%
3879684 223.2.1.46 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.57 44.0 3.35e-01 86.4% 41.2%
3515029 223.2.1.46 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M 0.55 43.0 3.34e-01 86.4% 44.7%
3512817 304.107.1.10 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.55 37.0 3.09e-01 86.4% 37.6%
3623922 331.10.2.6 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › BBS7_pf 0.54 37.0 3.45e-01 86.4% 55.3%
4221174 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.53 45.0 4.09e-01 100.0% 70.5%
4928898 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 41.0 3.97e-01 87.9% 81.3%
3903950 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.52 36.0 3.16e-01 74.2% 64.8%
3560257 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.51 42.0 2.77e-01 100.0% 59.4%
4327245 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 43.0 3.49e-01 98.5% 79.3%
3701084 316.1.1.14 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.51 40.0 3.07e-01 95.5% 55.0%